Composition and Function of Chicken Gut Microbiota

Studies analyzing the composition of gut microbiota are quite common at present, mainly due to the rapid development of DNA sequencing technologies within the last decade. This is valid also for chickens and their gut microbiota. However, chickens represent a specific model for host−microb...

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Main Author: Ivan Rychlik
Format: Article
Language:English
Published: MDPI AG 2020-01-01
Series:Animals
Subjects:
Online Access:https://www.mdpi.com/2076-2615/10/1/103
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author Ivan Rychlik
author_facet Ivan Rychlik
author_sort Ivan Rychlik
collection DOAJ
description Studies analyzing the composition of gut microbiota are quite common at present, mainly due to the rapid development of DNA sequencing technologies within the last decade. This is valid also for chickens and their gut microbiota. However, chickens represent a specific model for host−microbiota interactions since contact between parents and offspring has been completely interrupted in domesticated chickens. Nearly all studies describe microbiota of chicks from hatcheries and these chickens are considered as references and controls. In reality, such chickens represent an extreme experimental group since control chicks should be, by nature, hatched in nests in contact with the parent hen. Not properly realising this fact and utilising only 16S rRNA sequencing results means that many conclusions are of questionable biological relevance. The specifics of chicken-related gut microbiota are therefore stressed in this review together with current knowledge of the biological role of selected microbiota members. These microbiota members are then evaluated for their intended use as a form of next-generation probiotics.
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spelling doaj.art-5785d99ed20d48e888b317e659c69d172022-12-21T16:35:01ZengMDPI AGAnimals2076-26152020-01-0110110310.3390/ani10010103ani10010103Composition and Function of Chicken Gut MicrobiotaIvan Rychlik0Department of Immunology, Veterinary Research Institute, 621 00 Brno, Czech RepublicStudies analyzing the composition of gut microbiota are quite common at present, mainly due to the rapid development of DNA sequencing technologies within the last decade. This is valid also for chickens and their gut microbiota. However, chickens represent a specific model for host−microbiota interactions since contact between parents and offspring has been completely interrupted in domesticated chickens. Nearly all studies describe microbiota of chicks from hatcheries and these chickens are considered as references and controls. In reality, such chickens represent an extreme experimental group since control chicks should be, by nature, hatched in nests in contact with the parent hen. Not properly realising this fact and utilising only 16S rRNA sequencing results means that many conclusions are of questionable biological relevance. The specifics of chicken-related gut microbiota are therefore stressed in this review together with current knowledge of the biological role of selected microbiota members. These microbiota members are then evaluated for their intended use as a form of next-generation probiotics.https://www.mdpi.com/2076-2615/10/1/103chickengut microbiotacaecumileumfaecaldevelopmentbacteroidetesfirmicutes
spellingShingle Ivan Rychlik
Composition and Function of Chicken Gut Microbiota
Animals
chicken
gut microbiota
caecum
ileum
faecal
development
bacteroidetes
firmicutes
title Composition and Function of Chicken Gut Microbiota
title_full Composition and Function of Chicken Gut Microbiota
title_fullStr Composition and Function of Chicken Gut Microbiota
title_full_unstemmed Composition and Function of Chicken Gut Microbiota
title_short Composition and Function of Chicken Gut Microbiota
title_sort composition and function of chicken gut microbiota
topic chicken
gut microbiota
caecum
ileum
faecal
development
bacteroidetes
firmicutes
url https://www.mdpi.com/2076-2615/10/1/103
work_keys_str_mv AT ivanrychlik compositionandfunctionofchickengutmicrobiota