Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China
Maytenus guangxiensis (Celastraceae) is a rare and critically endangered species endemic to China. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 157,102 bp, which contained inverted repeat...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2020-01-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1710278 |
| _version_ | 1797639493676695552 |
|---|---|
| author | Yancai Shi Bingbing Liu |
| author_facet | Yancai Shi Bingbing Liu |
| author_sort | Yancai Shi |
| collection | DOAJ |
| description | Maytenus guangxiensis (Celastraceae) is a rare and critically endangered species endemic to China. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 157,102 bp, which contained inverted repeats (IR) of 26,476 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 85,559 bp and 18,591 bp, respectively. The cpDNA contains 130 genes, comprising 85 protein-coding genes, 37 tRNA genes and 8 rRNA genes. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 19 selected chloroplast genomes demonstrated that M. guangxiensis was close to the species Catha edulis. |
| first_indexed | 2024-03-11T13:17:27Z |
| format | Article |
| id | doaj.art-57a6145442534aa496c0bd323e53eb8b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:17:27Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-57a6145442534aa496c0bd323e53eb8b2023-11-03T11:00:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015153653710.1080/23802359.2019.17102781710278Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to ChinaYancai Shi0Bingbing Liu1Institute of Loess Plateau, Shanxi UniversityInstitute of Loess Plateau, Shanxi UniversityMaytenus guangxiensis (Celastraceae) is a rare and critically endangered species endemic to China. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 157,102 bp, which contained inverted repeats (IR) of 26,476 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 85,559 bp and 18,591 bp, respectively. The cpDNA contains 130 genes, comprising 85 protein-coding genes, 37 tRNA genes and 8 rRNA genes. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 19 selected chloroplast genomes demonstrated that M. guangxiensis was close to the species Catha edulis.http://dx.doi.org/10.1080/23802359.2019.1710278maytenuschloroplast genomephylogenetic analysis |
| spellingShingle | Yancai Shi Bingbing Liu Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China Mitochondrial DNA. Part B. Resources maytenus chloroplast genome phylogenetic analysis |
| title | Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China |
| title_full | Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China |
| title_fullStr | Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China |
| title_full_unstemmed | Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China |
| title_short | Complete chloroplast genome sequence of Maytenus guangxiensis (celastraceae), a rare and critically endangered species endemic to China |
| title_sort | complete chloroplast genome sequence of maytenus guangxiensis celastraceae a rare and critically endangered species endemic to china |
| topic | maytenus chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1710278 |
| work_keys_str_mv | AT yancaishi completechloroplastgenomesequenceofmaytenusguangxiensiscelastraceaearareandcriticallyendangeredspeciesendemictochina AT bingbingliu completechloroplastgenomesequenceofmaytenusguangxiensiscelastraceaearareandcriticallyendangeredspeciesendemictochina |