Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi'
Chen et al. recently reported evidence for inter-nucleus recombination in arbuscular mycorrhizal fungi (Chen et al., 2018a). Here, we report a reanalysis of their data. After filtering the data by excluding heterozygous sites in haploid nuclei, duplicated regions of the genome, and low-coverage dept...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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eLife Sciences Publications Ltd
2019-10-01
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| Series: | eLife |
| Subjects: | |
| Online Access: | https://elifesciences.org/articles/47301 |
| _version_ | 1811180537364086784 |
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| author | Benjamin Auxier Anna Bazzicalupo |
| author_facet | Benjamin Auxier Anna Bazzicalupo |
| author_sort | Benjamin Auxier |
| collection | DOAJ |
| description | Chen et al. recently reported evidence for inter-nucleus recombination in arbuscular mycorrhizal fungi (Chen et al., 2018a). Here, we report a reanalysis of their data. After filtering the data by excluding heterozygous sites in haploid nuclei, duplicated regions of the genome, and low-coverage depths base calls, we find the evidence for recombination to be very sparse. |
| first_indexed | 2024-04-11T09:04:46Z |
| format | Article |
| id | doaj.art-583a2287d81b4fe8bd1c3f78bfa28b76 |
| institution | Directory Open Access Journal |
| issn | 2050-084X |
| language | English |
| last_indexed | 2024-04-11T09:04:46Z |
| publishDate | 2019-10-01 |
| publisher | eLife Sciences Publications Ltd |
| record_format | Article |
| series | eLife |
| spelling | doaj.art-583a2287d81b4fe8bd1c3f78bfa28b762022-12-22T04:32:40ZengeLife Sciences Publications LtdeLife2050-084X2019-10-01810.7554/eLife.47301Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi'Benjamin Auxier0https://orcid.org/0000-0002-7743-0610Anna Bazzicalupo1https://orcid.org/0000-0001-5845-9517Laboratory of Genetics, Wageningen University, Wageningen, NetherlandsDepartment of Microbiology and Immunology, Montana State University, Bozeman, United StatesChen et al. recently reported evidence for inter-nucleus recombination in arbuscular mycorrhizal fungi (Chen et al., 2018a). Here, we report a reanalysis of their data. After filtering the data by excluding heterozygous sites in haploid nuclei, duplicated regions of the genome, and low-coverage depths base calls, we find the evidence for recombination to be very sparse.https://elifesciences.org/articles/47301AMFfungirecombination |
| spellingShingle | Benjamin Auxier Anna Bazzicalupo Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi' eLife AMF fungi recombination |
| title | Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi' |
| title_full | Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi' |
| title_fullStr | Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi' |
| title_full_unstemmed | Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi' |
| title_short | Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi' |
| title_sort | comment on single nucleus sequencing reveals evidence of inter nucleus recombination in arbuscular mycorrhizal fungi |
| topic | AMF fungi recombination |
| url | https://elifesciences.org/articles/47301 |
| work_keys_str_mv | AT benjaminauxier commentonsinglenucleussequencingrevealsevidenceofinternucleusrecombinationinarbuscularmycorrhizalfungi AT annabazzicalupo commentonsinglenucleussequencingrevealsevidenceofinternucleusrecombinationinarbuscularmycorrhizalfungi |