Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic prediction
As the world’s population grows and food needs diversification, the demand for cereals and horticultural crops with beneficial traits increases. In order to meet a variety of demands, suitable cultivars and innovative breeding methods need to be developed. Breeding methods have changed over time fol...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2023-01-01
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| Series: | Frontiers in Plant Science |
| Subjects: | |
| Online Access: | https://www.frontiersin.org/articles/10.3389/fpls.2023.1092584/full |
| _version_ | 1797948240707977216 |
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| author | Donghyun Jeon Yuna Kang Solji Lee Sehyun Choi Yeonjun Sung Tae-Ho Lee Changsoo Kim Changsoo Kim |
| author_facet | Donghyun Jeon Yuna Kang Solji Lee Sehyun Choi Yeonjun Sung Tae-Ho Lee Changsoo Kim Changsoo Kim |
| author_sort | Donghyun Jeon |
| collection | DOAJ |
| description | As the world’s population grows and food needs diversification, the demand for cereals and horticultural crops with beneficial traits increases. In order to meet a variety of demands, suitable cultivars and innovative breeding methods need to be developed. Breeding methods have changed over time following the advance of genetics. With the advent of new sequencing technology in the early 21st century, predictive breeding, such as genomic selection (GS), emerged when large-scale genomic information became available. GS shows good predictive ability for the selection of individuals with traits of interest even for quantitative traits by using various types of the whole genome-scanning markers, breaking away from the limitations of marker-assisted selection (MAS). In the current review, we briefly describe the history of breeding techniques, each breeding method, various statistical models applied to GS and methods to increase the GS efficiency. Consequently, we intend to propose and define the term digital breeding through this review article. Digital breeding is to develop a predictive breeding methods such as GS at a higher level, aiming to minimize human intervention by automatically proceeding breeding design, propagating breeding populations, and to make selections in consideration of various environments, climates, and topography during the breeding process. We also classified the phases of digital breeding based on the technologies and methods applied to each phase. This review paper will provide an understanding and a direction for the final evolution of plant breeding in the future. |
| first_indexed | 2024-04-10T21:40:14Z |
| format | Article |
| id | doaj.art-58be4561ea6e481da0529a3471860a78 |
| institution | Directory Open Access Journal |
| issn | 1664-462X |
| language | English |
| last_indexed | 2024-04-10T21:40:14Z |
| publishDate | 2023-01-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj.art-58be4561ea6e481da0529a3471860a782023-01-19T04:58:40ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2023-01-011410.3389/fpls.2023.10925841092584Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic predictionDonghyun Jeon0Yuna Kang1Solji Lee2Sehyun Choi3Yeonjun Sung4Tae-Ho Lee5Changsoo Kim6Changsoo Kim7Plant Computational Genomics Laboratory, Department of Science in Smart Agriculture Systems, Chungnam National University, Daejeon, Republic of KoreaPlant Computational Genomics Laboratory, Department of Crop Science, Chungnam National University, Daejeon, Republic of KoreaPlant Computational Genomics Laboratory, Department of Crop Science, Chungnam National University, Daejeon, Republic of KoreaPlant Computational Genomics Laboratory, Department of Crop Science, Chungnam National University, Daejeon, Republic of KoreaPlant Computational Genomics Laboratory, Department of Science in Smart Agriculture Systems, Chungnam National University, Daejeon, Republic of KoreaGenomics Division, National Institute of Agricultural Sciences, Jeonju, Republic of KoreaPlant Computational Genomics Laboratory, Department of Science in Smart Agriculture Systems, Chungnam National University, Daejeon, Republic of KoreaPlant Computational Genomics Laboratory, Department of Crop Science, Chungnam National University, Daejeon, Republic of KoreaAs the world’s population grows and food needs diversification, the demand for cereals and horticultural crops with beneficial traits increases. In order to meet a variety of demands, suitable cultivars and innovative breeding methods need to be developed. Breeding methods have changed over time following the advance of genetics. With the advent of new sequencing technology in the early 21st century, predictive breeding, such as genomic selection (GS), emerged when large-scale genomic information became available. GS shows good predictive ability for the selection of individuals with traits of interest even for quantitative traits by using various types of the whole genome-scanning markers, breaking away from the limitations of marker-assisted selection (MAS). In the current review, we briefly describe the history of breeding techniques, each breeding method, various statistical models applied to GS and methods to increase the GS efficiency. Consequently, we intend to propose and define the term digital breeding through this review article. Digital breeding is to develop a predictive breeding methods such as GS at a higher level, aiming to minimize human intervention by automatically proceeding breeding design, propagating breeding populations, and to make selections in consideration of various environments, climates, and topography during the breeding process. We also classified the phases of digital breeding based on the technologies and methods applied to each phase. This review paper will provide an understanding and a direction for the final evolution of plant breeding in the future.https://www.frontiersin.org/articles/10.3389/fpls.2023.1092584/fullQTLsGWASMASgenomic predictionmachine learningdeep learning |
| spellingShingle | Donghyun Jeon Yuna Kang Solji Lee Sehyun Choi Yeonjun Sung Tae-Ho Lee Changsoo Kim Changsoo Kim Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic prediction Frontiers in Plant Science QTLs GWAS MAS genomic prediction machine learning deep learning |
| title | Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic prediction |
| title_full | Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic prediction |
| title_fullStr | Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic prediction |
| title_full_unstemmed | Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic prediction |
| title_short | Digitalizing breeding in plants: A new trend of next-generation breeding based on genomic prediction |
| title_sort | digitalizing breeding in plants a new trend of next generation breeding based on genomic prediction |
| topic | QTLs GWAS MAS genomic prediction machine learning deep learning |
| url | https://www.frontiersin.org/articles/10.3389/fpls.2023.1092584/full |
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