Genome-wide development of interspecific microsatellite markers for Saccharum officinarum and Saccharum spontaneum

Genome-wide development of interspecific microsatellite markers for Saccharum officinarum and Saccharum spontaneum

Sugarcane has a large, complex, polyploid genome that has hindered the progress of genomic research and molecular marker-assisted selection. The user-friendly SSR markers have attracted considerable attention owing to their ideal genetic attributes. However, these markers were not characterized and...

Full description

Bibliographic Details
Main Authors:	Lei LIU, Heng-bo WANG, Yi-han LI, Shu-qi CHEN, Ming-xing WU, Mei-jie DOU, Yi-yin QI, Jing-ping FANG, Ji-sen ZHANG
Format:	Article
Language:	English
Published:	Elsevier 2022-01-01
Series:	Journal of Integrative Agriculture
Subjects:	Saccharum genome-wide simple repeat sequences (SSR) microsatellite molecular markers
Online Access:	http://www.sciencedirect.com/science/article/pii/S2095311922002076

Similar Items

Identification of genetically diverse parental combinations in saccharum complex utilizing unigene microsatellite markers
by: S. Senthilkumar, et al.
Published: (2018-06-01)

Data on the identification of microsatellite markers in Eisenia fetida and Eisenia andrei
by: Marta Jaskulak, et al.
Published: (2022-12-01)

Long read transcriptome sequencing of a sugarcane hybrid and its progenitors, Saccharum officinarum and S. spontaneum
by: Prathima Perumal Thirugnanasambandam, et al.
Published: (2023-08-01)

Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.)
by: Harmon, Monica, et al.
Published: (2018)

Bioacetilação de álcoois catalisada por Saccharum officinarum Bioacetylation of alcohols catalysed by Saccharum officinarum
by: João Carlos C. Assunção, et al.
Published: (2009-01-01)

Microsatellite Markers for the Invasive Species <i>Bidens alba</i> (Asteraceae)
by: Yong-Bin Lu, et al.
Published: (2014-05-01)

In silico characterization of microsatellites in Eucalyptus spp.: abundance, length variation and transposon associations
by: Edenilson Rabello, et al.
Published: (2005-01-01)

Genome-Wide Characterization of NLRs in <i>Saccharum spontaneum</i> L. and Their Responses to Leaf Blight in <i>Saccharum</i>
by: Zhoutao Wang, et al.
Published: (2021-01-01)

Optimizing depth and type of high‐throughput sequencing data for microsatellite discovery
by: Mark A. Chapman
Published: (2019-11-01)

Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum
by: Zhen Li, et al.
Published: (2021-06-01)

Characterization of new microsatellite markers from sugarcane (Saccharum officinarum) transcriptome
by: Yijing Gao, et al.
Published: (2020-09-01)

Development of 18 microsatellite markers for Atractylodes japonica
by: Jin‐Tae Jeong, et al.
Published: (2020-05-01)

Saccharum officinarum L. by-products (pith and rind) as potential source of prebiotic in vitro
by: Abdul Ghani Zidan, Dina
Published: (2019)

Microsatellite analysis to define genetic diversity of grapevines (<em>Vitis vinifera</em> L.) grown in Central and Western Mediterranean countries
by: Massimo Labra, et al.
Published: (2002-03-01)

Genetic diversity analysis of sugarcane ( Saccharum sp.) clones using simple sequence repeat markers of sugarcane and rice
by: G.Banumathi , V.Krishnasamy, M.Maheswaran, R.Samiyappan, P.Govindaraj and N.Kumaravadivel
Published: (2010-07-01)

Coil irrigation in sugar cane (Saccharum officinarum)
by: Jesús Sánchez Gutiérres, et al.
Published: (2016-01-01)

Identification and Expression Analysis of Hexokinases Family in <i>Saccharum spontaneum</i> L. under Drought and Cold Stresses
by: Ying Liu, et al.
Published: (2023-03-01)

Genus-Wide Microsatellite Primers for the Goldenrods (<i>Solidago</i>; Asteraceae)
by: James B. Beck, et al.
Published: (2014-04-01)

The characterisation of microsatellite markers reveals tetraploidy in the Greater Water Parsnip, Sium latifolium (Apiaceae)
by: Naomi J. Dalton, et al.
Published: (2017-06-01)

Population Structure and Genetic Diversity Analysis in Sugarcane (<i>Saccharum</i> spp. hybrids) and Six Related <i>Saccharum</i> Species
by: Haizheng Xiong, et al.
Published: (2022-02-01)

PCR-mediated recombination in development of microsatellite markers: mechanism and implications
by: Paula A. Roratto, et al.
Published: (2008-01-01)

Characterization of Saccharum spontaneum accessions from North-Eastern India
by: Manjunatha T, et al.
Published: (2018-03-01)

Nuclear microsatellite markers for population genetic studies in sugar maple (Acer saccharum Marsh.)
by: Sudhir Khodwekar, et al.
Published: (2015-12-01)

Evaluación de ensilajes mixtos de Saccharum officinarum y Gliricidia sepium con la utilización de aditivos Evaluation of mixed silages of Saccharum officinarum and Gliricidia sepium using additives
by: R Suárez, et al.
Published: (2011-03-01)

Authenticity Identification of <i>Saccharum officinarum</i> and <i>Saccharum spontaneum</i> Germplasm Materials
by: Xueting Li, et al.
Published: (2022-03-01)

Morphological and Biochemical Responses of Glagah ( Saccharum spontaneum L.) Accessions to Drought Stress
by: Aminatun Munawarti, et al.
Published: (2014-01-01)

First report of Paraphaeosphaeria angularis as endophyte in sugarcane (Saccharum officinarum) from India
by: K MALARVIZHI, et al.
Published: (2022-12-01)

First record of nucleus migration in premeiotic antherial cells of Saccharum spontaneum L. (Poaceae)
by: MANISH KAPOOR, et al.
Published: (2022-09-01)

Variation in the flowering behaviour of Saccharum spontaneum L. world collection at Coimbatore
by: Subramanian Karthigeyan, et al.
Published: (2023-04-01)

Cluster and principal component analyses for assessment of genetic diversity in Saccharum spontaneum
by: Vinu V, et al.
Published: (2023-08-01)

High-Throughput Microsatellite Markers Development for Genetic Characterization of Emerging <i>Sporothrix</i> Species
by: Luiza Chaves de Miranda Leonhardt Losada, et al.
Published: (2023-03-01)

in Silico Microsatellite Development in Arum Lily (Zantedeschia aethiopica)
by: V Radhika, et al.
Published: (2011-06-01)

Genome-Wide Characterization of Lectin Receptor Kinases in <i>Saccharum spontaneum</i> L. and Their Responses to <i>Stagonospora tainanensis</i> Infection
by: Zhoutao Wang, et al.
Published: (2021-02-01)

Constructing and comparing selection indices for early growth traits in Saccharum spontaneum
by: T. Lakshmi Pathy*, V. Vinu, Adhini S. Pazhany and S. Karthigeyan
Published: (2022-03-01)

Cytological investigation on interspecific progenies of red fleshed Saccharum robustum
by: K Chandran, et al.
Published: (2021-08-01)

Cytological investigation on interspecific progenies of red fleshed Saccharum robustum
by: K Chandran, et al.
Published: (2021-08-01)

Cytological investigation on interspecific progenies of red fleshed Saccharum robustum
by: K Chandran, et al.
Published: (2021-06-01)

Physicochemical Characterization of Native and Steam Explosion Pretreated Wild Sugarcane (Saccharum spontaneum)
by: Aruna Selvaraj, et al.
Published: (2020-10-01)

Optimization of protoplast isolation, transformation and its application in sugarcane (Saccharum spontaneum L)
by: Qiongli Wang, et al.
Published: (2021-02-01)

All nonhomologous chromosomes and rearrangements in Saccharum officinarum × Saccharum spontaneum allopolyploids identified by oligo-based painting
by: Jin Chai, et al.
Published: (2023-10-01)