The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86...
| Main Authors: | , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1624213 |
| _version_ | 1827773399630348288 |
|---|---|
| author | Juhyeon Min Yongsung Kim Hong Xi Kyeong-In Heo Jongsun Park |
| author_facet | Juhyeon Min Yongsung Kim Hong Xi Kyeong-In Heo Jongsun Park |
| author_sort | Juhyeon Min |
| collection | DOAJ |
| description | We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4%, 31.3%, and 43.0%, respectively. Interestingly, almost most of sequence variations identified against five coffee chloroplast genomes are insertions and deletions. |
| first_indexed | 2024-03-11T13:21:31Z |
| format | Article |
| id | doaj.art-59413d63a8b848c1b81e9037b91798ac |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:31Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-59413d63a8b848c1b81e9037b91798ac2023-11-03T10:28:34ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422240224110.1080/23802359.2019.16242131624213The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)Juhyeon Min0Yongsung Kim1Hong Xi2Kyeong-In Heo3Jongsun Park4InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4%, 31.3%, and 43.0%, respectively. Interestingly, almost most of sequence variations identified against five coffee chloroplast genomes are insertions and deletions.http://dx.doi.org/10.1080/23802359.2019.1624213coffea arabicatypicachloroplast genomelow-level sequence variations |
| spellingShingle | Juhyeon Min Yongsung Kim Hong Xi Kyeong-In Heo Jongsun Park The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) Mitochondrial DNA. Part B. Resources coffea arabica typica chloroplast genome low-level sequence variations |
| title | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
| title_full | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
| title_fullStr | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
| title_full_unstemmed | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
| title_short | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
| title_sort | complete chloroplast genome of coffee tree coffea arabica l typica rubiaceae |
| topic | coffea arabica typica chloroplast genome low-level sequence variations |
| url | http://dx.doi.org/10.1080/23802359.2019.1624213 |
| work_keys_str_mv | AT juhyeonmin thecompletechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT yongsungkim thecompletechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT hongxi thecompletechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT kyeonginheo thecompletechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT jongsunpark thecompletechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT juhyeonmin completechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT yongsungkim completechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT hongxi completechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT kyeonginheo completechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae AT jongsunpark completechloroplastgenomeofcoffeetreecoffeaarabicaltypicarubiaceae |