Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform
The Pacific limpet Cellana nigrolineata is one of the most commonly found limpets in the intertidal shores of Japan. Here, we report the full mitogenome sequence of an individual specimen of the species, which was collected from the intertidal rocky beach in the Nada beach of Gobo City, Wakayama, Ja...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1934579 |
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| author | Satoko Nakashima Moe Shimizu Kazuki Hirota Shimpei F. Hiruta Nakaji Nagisa Toshihiko Fujita Takenori Sasaki Davin H. E. Setiamarga |
| author_facet | Satoko Nakashima Moe Shimizu Kazuki Hirota Shimpei F. Hiruta Nakaji Nagisa Toshihiko Fujita Takenori Sasaki Davin H. E. Setiamarga |
| author_sort | Satoko Nakashima |
| collection | DOAJ |
| description | The Pacific limpet Cellana nigrolineata is one of the most commonly found limpets in the intertidal shores of Japan. Here, we report the full mitogenome sequence of an individual specimen of the species, which was collected from the intertidal rocky beach in the Nada beach of Gobo City, Wakayama, Japan (33.8316 N, 135.1751 E), in 2018. The sequence was determined by the shotgun sequencing method using the NGS Illumina MiSeq platform. The genomic structure of C. nigrolineata is the same as the previously reported congener, C. radiata, which shows a representative Nacellidae and metazoan mitogenomic structures. The mitogenome has all of its 37 genes included in its 16,153 bp, with one control region located between the tRNA-Cys and tRNA-Gly genes. In order to clarify the phylogenetic position of C. nigrolineata in Gastropoda, a data set including the mitogenomes of 10 patellogastropods, 10 non-patellogastropod gastropods, and four outgroups were used in maximum likelihood inferences. Although with some exceptions, the resulting phylogeny supported the monophylies of traditionally accepted gastropod subclasses, and thus confirms the position of C. nigrolineata in Patellogastropoda. |
| first_indexed | 2024-03-11T13:08:31Z |
| format | Article |
| id | doaj.art-59482c4bfd824c518da398329d529055 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:31Z |
| publishDate | 2021-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-59482c4bfd824c518da398329d5290552023-11-03T14:16:11ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-07-01671857185910.1080/23802359.2021.19345791934579Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platformSatoko Nakashima0Moe Shimizu1Kazuki Hirota2Shimpei F. Hiruta3Nakaji Nagisa4Toshihiko Fujita5Takenori Sasaki6Davin H. E. Setiamarga7National Institute of Technology (KOSEN), Wakayama CollegeNational Institute of Technology (KOSEN), Wakayama CollegeNational Institute of Technology (KOSEN), Wakayama CollegeNational Museum of Nature and ScienceNational Institute of Technology (KOSEN), Wakayama CollegeNational Museum of Nature and ScienceThe University Museum, The University of TokyoNational Institute of Technology (KOSEN), Wakayama CollegeThe Pacific limpet Cellana nigrolineata is one of the most commonly found limpets in the intertidal shores of Japan. Here, we report the full mitogenome sequence of an individual specimen of the species, which was collected from the intertidal rocky beach in the Nada beach of Gobo City, Wakayama, Japan (33.8316 N, 135.1751 E), in 2018. The sequence was determined by the shotgun sequencing method using the NGS Illumina MiSeq platform. The genomic structure of C. nigrolineata is the same as the previously reported congener, C. radiata, which shows a representative Nacellidae and metazoan mitogenomic structures. The mitogenome has all of its 37 genes included in its 16,153 bp, with one control region located between the tRNA-Cys and tRNA-Gly genes. In order to clarify the phylogenetic position of C. nigrolineata in Gastropoda, a data set including the mitogenomes of 10 patellogastropods, 10 non-patellogastropod gastropods, and four outgroups were used in maximum likelihood inferences. Although with some exceptions, the resulting phylogeny supported the monophylies of traditionally accepted gastropod subclasses, and thus confirms the position of C. nigrolineata in Patellogastropoda.http://dx.doi.org/10.1080/23802359.2021.1934579patellogastropodaintertidalnada coastcellana nigrolineatamitogenome shotgun sequencing |
| spellingShingle | Satoko Nakashima Moe Shimizu Kazuki Hirota Shimpei F. Hiruta Nakaji Nagisa Toshihiko Fujita Takenori Sasaki Davin H. E. Setiamarga Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform Mitochondrial DNA. Part B. Resources patellogastropoda intertidal nada coast cellana nigrolineata mitogenome shotgun sequencing |
| title | Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform |
| title_full | Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform |
| title_fullStr | Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform |
| title_full_unstemmed | Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform |
| title_short | Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform |
| title_sort | complete mitochondrial genome of the pacific limpet cellana nigrolineata gastropoda patellogastropoda determined by shotgun sequencing using the illumina ngs platform |
| topic | patellogastropoda intertidal nada coast cellana nigrolineata mitogenome shotgun sequencing |
| url | http://dx.doi.org/10.1080/23802359.2021.1934579 |
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