HH-suite3 for fast remote homology detection and deep protein annotation

HH-suite3 for fast remote homology detection and deep protein annotation

Abstract Background HH-suite is a widely used open source software suite for sensitive sequence similarity searches and protein fold recognition. It is based on pairwise alignment of profile Hidden Markov models (HMMs), which represent multiple sequence alignments of homologous proteins. Results We...

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Bibliographic Details
Main Authors: Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding
Format: Article
Language:English
Published: BMC 2019-09-01
Series:BMC Bioinformatics
Subjects:
Homology detection
Sequence search
Protein alignment
Algorithm
Profile HMM
SIMD
Online Access:http://link.springer.com/article/10.1186/s12859-019-3019-7

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http://link.springer.com/article/10.1186/s12859-019-3019-7

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