KMC3 and CHTKC: Best Scenarios, Deficiencies, and Challenges in High-Throughput Sequencing Data Analysis

KMC3 and CHTKC: Best Scenarios, Deficiencies, and Challenges in High-Throughput Sequencing Data Analysis

Background: K-mer frequency counting is an upstream process of many bioinformatics data analysis workflows. KMC3 and CHTKC are the representative partition-based k-mer counting and non-partition-based k-mer counting algorithms, respectively. This paper evaluates the two algorithms and presents their...

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Bibliographic Details
Main Authors: Deyou Tang, Daqiang Tan, Weihao Xiao, Jiabin Lin, Juan Fu
Format: Article
Language:English
Published: MDPI AG 2022-03-01
Series:Algorithms
Subjects:
k-mer
KMC
CHTKC
next generation sequencing
algorithm evaluation
optimization
Online Access:https://www.mdpi.com/1999-4893/15/4/107

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