The complete chloroplast genome sequence of Ludisia discolor from Hainan of China
Ludisia discolor is one of the most important ornamental and medicinal orchids. To improve our understanding of the evolution of chloroplast, we resequenced complete chloroplast (cp) genome of L. discolor from Hainan, China. The cp genome sequence of L. discolor of Hainan was 153,324 bp in length, w...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1678438 |
| _version_ | 1827773191951482880 |
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| author | Xia Yu Tai-Xiang Xie Bin Liu Di-Yang Zhang Xue-Die Liu Ye Ai Zhong-Jian Liu |
| author_facet | Xia Yu Tai-Xiang Xie Bin Liu Di-Yang Zhang Xue-Die Liu Ye Ai Zhong-Jian Liu |
| author_sort | Xia Yu |
| collection | DOAJ |
| description | Ludisia discolor is one of the most important ornamental and medicinal orchids. To improve our understanding of the evolution of chloroplast, we resequenced complete chloroplast (cp) genome of L. discolor from Hainan, China. The cp genome sequence of L. discolor of Hainan was 153,324 bp in length, with a large single-copy (LSC) region of 82,922 bp, a small single-copy (SSC) region of 17,258 bp, and a pair of inverted repeats (IR) regions of 26,572 bp. Complete chloroplast genome contain 132 genes, there were 86 protein-coding genes, 38 tRNA genes and eight rRNA genes. The phylogenetic tree showed that L. discolor of Hainan is sister to L. discolor (unknown distributed region). Their cp genomes have same gene number but different in length of genome, indicating high conserved among them. |
| first_indexed | 2024-03-11T13:19:27Z |
| format | Article |
| id | doaj.art-5a88b84575ef48e4badf383546a102c5 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:27Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-5a88b84575ef48e4badf383546a102c52023-11-03T10:38:50ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423663366410.1080/23802359.2019.16784381678438The complete chloroplast genome sequence of Ludisia discolor from Hainan of ChinaXia Yu0Tai-Xiang Xie1Bin Liu2Di-Yang Zhang3Xue-Die Liu4Ye Ai5Zhong-Jian Liu6Fujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityLudisia discolor is one of the most important ornamental and medicinal orchids. To improve our understanding of the evolution of chloroplast, we resequenced complete chloroplast (cp) genome of L. discolor from Hainan, China. The cp genome sequence of L. discolor of Hainan was 153,324 bp in length, with a large single-copy (LSC) region of 82,922 bp, a small single-copy (SSC) region of 17,258 bp, and a pair of inverted repeats (IR) regions of 26,572 bp. Complete chloroplast genome contain 132 genes, there were 86 protein-coding genes, 38 tRNA genes and eight rRNA genes. The phylogenetic tree showed that L. discolor of Hainan is sister to L. discolor (unknown distributed region). Their cp genomes have same gene number but different in length of genome, indicating high conserved among them.http://dx.doi.org/10.1080/23802359.2019.1678438ludisia discolourchloroplast genomephylogenyillumina sequencing |
| spellingShingle | Xia Yu Tai-Xiang Xie Bin Liu Di-Yang Zhang Xue-Die Liu Ye Ai Zhong-Jian Liu The complete chloroplast genome sequence of Ludisia discolor from Hainan of China Mitochondrial DNA. Part B. Resources ludisia discolour chloroplast genome phylogeny illumina sequencing |
| title | The complete chloroplast genome sequence of Ludisia discolor from Hainan of China |
| title_full | The complete chloroplast genome sequence of Ludisia discolor from Hainan of China |
| title_fullStr | The complete chloroplast genome sequence of Ludisia discolor from Hainan of China |
| title_full_unstemmed | The complete chloroplast genome sequence of Ludisia discolor from Hainan of China |
| title_short | The complete chloroplast genome sequence of Ludisia discolor from Hainan of China |
| title_sort | complete chloroplast genome sequence of ludisia discolor from hainan of china |
| topic | ludisia discolour chloroplast genome phylogeny illumina sequencing |
| url | http://dx.doi.org/10.1080/23802359.2019.1678438 |
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