Considerations for constructing a protein sequence database for metaproteomics
Mass spectrometry-based metaproteomics has emerged as a prominent technique for interrogating the functions of specific organisms in microbial communities, in addition to total community function. Identifying proteins by mass spectrometry requires matching mass spectra of fragmented peptide ions to...
Main Authors: | J. Alfredo Blakeley-Ruiz, Manuel Kleiner |
---|---|
Format: | Article |
Language: | English |
Published: |
Elsevier
2022-01-01
|
Series: | Computational and Structural Biotechnology Journal |
Subjects: | |
Online Access: | http://www.sciencedirect.com/science/article/pii/S2001037022000253 |
Similar Items
-
Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities
by: Manuel Kleiner
Published: (2019-06-01) -
Metaproteomics—An Advantageous Option in Studies of Host-Microbiota Interaction
by: Oleg Karaduta, et al.
Published: (2021-04-01) -
Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics
by: Enhui Wu, et al.
Published: (2024-03-01) -
Novel functional insights into the microbiome inhabiting marine plastic debris: critical considerations to counteract the challenges of thin biofilms using multi-omics and comparative metaproteomics
by: Lauren F. Messer, et al.
Published: (2024-02-01) -
Metaproteomic analysis of human gut microbiota: where are we heading?
by: Pey Yee Lee, et al.
Published: (2017-06-01)