Information Theoretic Study of COVID-19 Genome
In this paper, we analyse the genome sequence of COVID-19 on a information point of view, and we compare that with past and present genomes. We use the powerful tool of joint complexity in order to quantify the similarities measured between the various potential parent genomes. The tool has a comput...
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| Format: | Article |
| Language: | English |
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MDPI AG
2024-03-01
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| Series: | Entropy |
| Subjects: | |
| Online Access: | https://www.mdpi.com/1099-4300/26/3/223 |
| _version_ | 1797241171619086336 |
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| author | Philippe Jacquet |
| author_facet | Philippe Jacquet |
| author_sort | Philippe Jacquet |
| collection | DOAJ |
| description | In this paper, we analyse the genome sequence of COVID-19 on a information point of view, and we compare that with past and present genomes. We use the powerful tool of joint complexity in order to quantify the similarities measured between the various potential parent genomes. The tool has a computing complexity of several orders of magnitude below the classic Smith–Waterman algorithm and would allow it to be used on a larger scale. |
| first_indexed | 2024-04-24T18:19:05Z |
| format | Article |
| id | doaj.art-5b5142127434470d9408c43e51f83533 |
| institution | Directory Open Access Journal |
| issn | 1099-4300 |
| language | English |
| last_indexed | 2024-04-24T18:19:05Z |
| publishDate | 2024-03-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Entropy |
| spelling | doaj.art-5b5142127434470d9408c43e51f835332024-03-27T13:36:54ZengMDPI AGEntropy1099-43002024-03-0126322310.3390/e26030223Information Theoretic Study of COVID-19 GenomePhilippe Jacquet0Inria Saclay Ile-de-France, 91120 Palaiseau, FranceIn this paper, we analyse the genome sequence of COVID-19 on a information point of view, and we compare that with past and present genomes. We use the powerful tool of joint complexity in order to quantify the similarities measured between the various potential parent genomes. The tool has a computing complexity of several orders of magnitude below the classic Smith–Waterman algorithm and would allow it to be used on a larger scale.https://www.mdpi.com/1099-4300/26/3/223genomeCOVID-19joint complexitypattern matching |
| spellingShingle | Philippe Jacquet Information Theoretic Study of COVID-19 Genome Entropy genome COVID-19 joint complexity pattern matching |
| title | Information Theoretic Study of COVID-19 Genome |
| title_full | Information Theoretic Study of COVID-19 Genome |
| title_fullStr | Information Theoretic Study of COVID-19 Genome |
| title_full_unstemmed | Information Theoretic Study of COVID-19 Genome |
| title_short | Information Theoretic Study of COVID-19 Genome |
| title_sort | information theoretic study of covid 19 genome |
| topic | genome COVID-19 joint complexity pattern matching |
| url | https://www.mdpi.com/1099-4300/26/3/223 |
| work_keys_str_mv | AT philippejacquet informationtheoreticstudyofcovid19genome |