Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition
Abstract The Ocean microbiome has a crucial role in Earth’s biogeochemical cycles. During the last decade, global cruises such as Tara Oceans and the Malaspina Expedition have expanded our understanding of the diversity and genetic repertoire of marine microbes. Nevertheless, there are still knowled...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2024-02-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-024-02974-1 |
| _version_ | 1827328672677232640 |
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| author | Pablo Sánchez Felipe H. Coutinho Marta Sebastián Massimo C. Pernice Raquel Rodríguez-Martínez Guillem Salazar Francisco Miguel Cornejo-Castillo Stéphane Pesant Xabier López-Alforja Ester María López-García Susana Agustí Takashi Gojobori Ramiro Logares Maria Montserrat Sala Dolors Vaqué Ramon Massana Carlos M. Duarte Silvia G. Acinas Josep M. Gasol |
| author_facet | Pablo Sánchez Felipe H. Coutinho Marta Sebastián Massimo C. Pernice Raquel Rodríguez-Martínez Guillem Salazar Francisco Miguel Cornejo-Castillo Stéphane Pesant Xabier López-Alforja Ester María López-García Susana Agustí Takashi Gojobori Ramiro Logares Maria Montserrat Sala Dolors Vaqué Ramon Massana Carlos M. Duarte Silvia G. Acinas Josep M. Gasol |
| author_sort | Pablo Sánchez |
| collection | DOAJ |
| description | Abstract The Ocean microbiome has a crucial role in Earth’s biogeochemical cycles. During the last decade, global cruises such as Tara Oceans and the Malaspina Expedition have expanded our understanding of the diversity and genetic repertoire of marine microbes. Nevertheless, there are still knowledge gaps regarding their diversity patterns throughout depth gradients ranging from the surface to the deep ocean. Here we present a dataset of 76 microbial metagenomes (MProfile) of the picoplankton size fraction (0.2–3.0 µm) collected in 11 vertical profiles covering contrasting ocean regions sampled during the Malaspina Expedition circumnavigation (7 depths, from surface to 4,000 m deep). The MProfile dataset produced 1.66 Tbp of raw DNA sequences from which we derived: 17.4 million genes clustered at 95% sequence similarity (M-GeneDB-VP), 2,672 metagenome-assembled genomes (MAGs) of Archaea and Bacteria (Malaspina-VP-MAGs), and over 100,000 viral genomic sequences. This dataset will be a valuable resource for exploring the functional and taxonomic connectivity between the photic and bathypelagic tropical and sub-tropical ocean, while increasing our general knowledge of the Ocean microbiome. |
| first_indexed | 2024-03-07T15:20:55Z |
| format | Article |
| id | doaj.art-5c7246ea141c45dbae28f71507ce6edc |
| institution | Directory Open Access Journal |
| issn | 2052-4463 |
| language | English |
| last_indexed | 2024-03-07T15:20:55Z |
| publishDate | 2024-02-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj.art-5c7246ea141c45dbae28f71507ce6edc2024-03-05T17:39:30ZengNature PortfolioScientific Data2052-44632024-02-0111111210.1038/s41597-024-02974-1Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina ExpeditionPablo Sánchez0Felipe H. Coutinho1Marta Sebastián2Massimo C. Pernice3Raquel Rodríguez-Martínez4Guillem Salazar5Francisco Miguel Cornejo-Castillo6Stéphane Pesant7Xabier López-Alforja8Ester María López-García9Susana Agustí10Takashi Gojobori11Ramiro Logares12Maria Montserrat Sala13Dolors Vaqué14Ramon Massana15Carlos M. Duarte16Silvia G. Acinas17Josep M. Gasol18Institut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICDepartamento de Biotecnología, Facultad de Ciencias del Mar y Recursos Biológicos, Universidad de AntofagastaInstitute of Microbiology and Swiss Institute of Bioinformatics, ETH ZürichInstitut de Ciències del Mar, CSICEMBL’s European Bioinformatics Institute (EMBL-EBI)Institut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICKing Abdullah University of Science and Technology (KAUST), Red Sea Research Center (RSRC) and Computational Bioscience Research Center (CBRC)King Abdullah University of Science and Technology (KAUST), Red Sea Research Center (RSRC) and Computational Bioscience Research Center (CBRC)Institut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICKing Abdullah University of Science and Technology (KAUST), Red Sea Research Center (RSRC) and Computational Bioscience Research Center (CBRC)Institut de Ciències del Mar, CSICInstitut de Ciències del Mar, CSICAbstract The Ocean microbiome has a crucial role in Earth’s biogeochemical cycles. During the last decade, global cruises such as Tara Oceans and the Malaspina Expedition have expanded our understanding of the diversity and genetic repertoire of marine microbes. Nevertheless, there are still knowledge gaps regarding their diversity patterns throughout depth gradients ranging from the surface to the deep ocean. Here we present a dataset of 76 microbial metagenomes (MProfile) of the picoplankton size fraction (0.2–3.0 µm) collected in 11 vertical profiles covering contrasting ocean regions sampled during the Malaspina Expedition circumnavigation (7 depths, from surface to 4,000 m deep). The MProfile dataset produced 1.66 Tbp of raw DNA sequences from which we derived: 17.4 million genes clustered at 95% sequence similarity (M-GeneDB-VP), 2,672 metagenome-assembled genomes (MAGs) of Archaea and Bacteria (Malaspina-VP-MAGs), and over 100,000 viral genomic sequences. This dataset will be a valuable resource for exploring the functional and taxonomic connectivity between the photic and bathypelagic tropical and sub-tropical ocean, while increasing our general knowledge of the Ocean microbiome.https://doi.org/10.1038/s41597-024-02974-1 |
| spellingShingle | Pablo Sánchez Felipe H. Coutinho Marta Sebastián Massimo C. Pernice Raquel Rodríguez-Martínez Guillem Salazar Francisco Miguel Cornejo-Castillo Stéphane Pesant Xabier López-Alforja Ester María López-García Susana Agustí Takashi Gojobori Ramiro Logares Maria Montserrat Sala Dolors Vaqué Ramon Massana Carlos M. Duarte Silvia G. Acinas Josep M. Gasol Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition Scientific Data |
| title | Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition |
| title_full | Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition |
| title_fullStr | Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition |
| title_full_unstemmed | Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition |
| title_short | Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition |
| title_sort | marine picoplankton metagenomes and mags from eleven vertical profiles obtained by the malaspina expedition |
| url | https://doi.org/10.1038/s41597-024-02974-1 |
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