Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogeny
Pseudobagrus gracilis is an endemic bagrid catfish in the Pearl River. To date, sparse studies conducted on this species have blocked our understanding of this species. In this study, the complete mitochondrial genome of P. gracilis was sequenced and reported using Illumina MiSeq platform. The P. gr...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-08-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1951626 |
| _version_ | 1797638783481413632 |
|---|---|
| author | Shuli Zhu Jie Li |
| author_facet | Shuli Zhu Jie Li |
| author_sort | Shuli Zhu |
| collection | DOAJ |
| description | Pseudobagrus gracilis is an endemic bagrid catfish in the Pearl River. To date, sparse studies conducted on this species have blocked our understanding of this species. In this study, the complete mitochondrial genome of P. gracilis was sequenced and reported using Illumina MiSeq platform. The P. gracilis mitogenome was 16,527 bp in length and comprised 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and one control region (D-loop). Its overall nucleotide base composition was 31.0% (A), 15.6% (G), 26.3% (C), and 27.1% (T), with an AT content 58.1%. Phylogenetic analyses based on Neighbor-joining approach revealed that Pseudobagrus species formed three lineages (I, II and III) and P. gracilis had close relationship with P. emarginatus, P. pratti and P. truncatus. |
| first_indexed | 2024-03-11T13:08:32Z |
| format | Article |
| id | doaj.art-5cb251d4f7444204a0c8a7d56b3ad840 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:32Z |
| publishDate | 2021-08-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-5cb251d4f7444204a0c8a7d56b3ad8402023-11-03T14:28:29ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-08-01682371237210.1080/23802359.2021.19516261951626Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogenyShuli Zhu0Jie Li1Pearl River Fisheries Research Institute, Chinese Academy of Fishery SciencesPearl River Fisheries Research Institute, Chinese Academy of Fishery SciencesPseudobagrus gracilis is an endemic bagrid catfish in the Pearl River. To date, sparse studies conducted on this species have blocked our understanding of this species. In this study, the complete mitochondrial genome of P. gracilis was sequenced and reported using Illumina MiSeq platform. The P. gracilis mitogenome was 16,527 bp in length and comprised 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and one control region (D-loop). Its overall nucleotide base composition was 31.0% (A), 15.6% (G), 26.3% (C), and 27.1% (T), with an AT content 58.1%. Phylogenetic analyses based on Neighbor-joining approach revealed that Pseudobagrus species formed three lineages (I, II and III) and P. gracilis had close relationship with P. emarginatus, P. pratti and P. truncatus.http://dx.doi.org/10.1080/23802359.2021.1951626pseudobagrus gracilismitochondrial genomephylogenetic analyses |
| spellingShingle | Shuli Zhu Jie Li Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogeny Mitochondrial DNA. Part B. Resources pseudobagrus gracilis mitochondrial genome phylogenetic analyses |
| title | Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogeny |
| title_full | Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogeny |
| title_fullStr | Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogeny |
| title_full_unstemmed | Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogeny |
| title_short | Determination of the complete mitochondrial genome of Pseudobagrus gracilis (Siluriformes: Bagridae) and its phylogeny |
| title_sort | determination of the complete mitochondrial genome of pseudobagrus gracilis siluriformes bagridae and its phylogeny |
| topic | pseudobagrus gracilis mitochondrial genome phylogenetic analyses |
| url | http://dx.doi.org/10.1080/23802359.2021.1951626 |
| work_keys_str_mv | AT shulizhu determinationofthecompletemitochondrialgenomeofpseudobagrusgracilissiluriformesbagridaeanditsphylogeny AT jieli determinationofthecompletemitochondrialgenomeofpseudobagrusgracilissiluriformesbagridaeanditsphylogeny |