Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks

Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks

Accurate inference of who infected whom in an infectious disease outbreak is critical for the delivery of effective infection prevention and control. The increased resolution of pathogen whole-genome sequencing has significantly improved our ability to infer transmission events. Despite this, transm...

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Bibliographic Details
Main Authors: Arturo Torres Ortiz, Michelle Kendall, Nathaniel Storey, James Hatcher, Helen Dunn, Sunando Roy, Rachel Williams, Charlotte Williams, Richard A Goldstein, Xavier Didelot, Kathryn Harris, Judith Breuer, Louis Grandjean
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2023-09-01
Series:eLife
Subjects:
phylogenetics
within-host diversity
SARS-CoV-2
infectious disease
Online Access:https://elifesciences.org/articles/84384

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