Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-Seq
Teosinte branched 1/cycloidea/proliferating cell factor (TCP) transcription factors play a key role in the regulation of plant biotic and abiotic stresses. In this study, our results show that SmTCP7a positively regulated bacterial wilt that was caused by <i>Ralstonia solanacearum.</i> C...
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MDPI AG
2022-06-01
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| Series: | International Journal of Molecular Sciences |
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| author | Xi’ou Xiao Wenqiu Lin Enyou Feng Caiyu Wu Xiongchang Ou |
| author_facet | Xi’ou Xiao Wenqiu Lin Enyou Feng Caiyu Wu Xiongchang Ou |
| author_sort | Xi’ou Xiao |
| collection | DOAJ |
| description | Teosinte branched 1/cycloidea/proliferating cell factor (TCP) transcription factors play a key role in the regulation of plant biotic and abiotic stresses. In this study, our results show that SmTCP7a positively regulated bacterial wilt that was caused by <i>Ralstonia solanacearum.</i> ChIP-seq was conducted to analyze the transcriptional regulation mechanism of SmTCP7a before (R0 h) and 48 h after infection (R48 h). SmTCP7a regulated a total of 92 and 91 peak-associated genes in R0 h and R48 h, respectively. A KEGG (Kyoto encyclopedia of genes and genomes) pathway analysis showed that phenylpropanoid biosynthesis, MAPK (mitogen-activated protein kinas) signaling pathway, plant hormone signal transduction and plant-pathogen interactions were involved. The difference in peaks between R0 h and R48 h showed that there were three peak-associated genes that were modulated by infection. A better understanding of the potential target genes of SmTCP7a in response to <i>R. solanacearum</i> will provide a comprehensive understanding of the SmTCP7a regulatory mechanism during the eggplant defense response to bacterial wilt. |
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| language | English |
| last_indexed | 2024-03-09T23:32:05Z |
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| spelling | doaj.art-5d2e8c70e2734351aa96bf6f294c8dba2023-11-23T17:07:45ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672022-06-012312684410.3390/ijms23126844Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-SeqXi’ou Xiao0Wenqiu Lin1Enyou Feng2Caiyu Wu3Xiongchang Ou4South Subtropical Crop Research Institute Chinese, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaSouth Subtropical Crop Research Institute Chinese, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaZhanjiang Academy of Agricultural Sciences, Zhanjiang 524091, ChinaSouth Subtropical Crop Research Institute Chinese, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaSouth Subtropical Crop Research Institute Chinese, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, ChinaTeosinte branched 1/cycloidea/proliferating cell factor (TCP) transcription factors play a key role in the regulation of plant biotic and abiotic stresses. In this study, our results show that SmTCP7a positively regulated bacterial wilt that was caused by <i>Ralstonia solanacearum.</i> ChIP-seq was conducted to analyze the transcriptional regulation mechanism of SmTCP7a before (R0 h) and 48 h after infection (R48 h). SmTCP7a regulated a total of 92 and 91 peak-associated genes in R0 h and R48 h, respectively. A KEGG (Kyoto encyclopedia of genes and genomes) pathway analysis showed that phenylpropanoid biosynthesis, MAPK (mitogen-activated protein kinas) signaling pathway, plant hormone signal transduction and plant-pathogen interactions were involved. The difference in peaks between R0 h and R48 h showed that there were three peak-associated genes that were modulated by infection. A better understanding of the potential target genes of SmTCP7a in response to <i>R. solanacearum</i> will provide a comprehensive understanding of the SmTCP7a regulatory mechanism during the eggplant defense response to bacterial wilt.https://www.mdpi.com/1422-0067/23/12/6844gene regulationMAP kinase<i>R. solanacearum</i>resistanceTCP transcription factors |
| spellingShingle | Xi’ou Xiao Wenqiu Lin Enyou Feng Caiyu Wu Xiongchang Ou Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-Seq International Journal of Molecular Sciences gene regulation MAP kinase <i>R. solanacearum</i> resistance TCP transcription factors |
| title | Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-Seq |
| title_full | Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-Seq |
| title_fullStr | Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-Seq |
| title_full_unstemmed | Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-Seq |
| title_short | Genome-Wide Identification of Binding Sites for SmTCP7a Transcription Factors of Eggplant during Bacterial Wilt Resistance by ChIP-Seq |
| title_sort | genome wide identification of binding sites for smtcp7a transcription factors of eggplant during bacterial wilt resistance by chip seq |
| topic | gene regulation MAP kinase <i>R. solanacearum</i> resistance TCP transcription factors |
| url | https://www.mdpi.com/1422-0067/23/12/6844 |
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