Determinants of response to CDK4/6 inhibitors in the real-world setting

Abstract Despite widespread use and a known mechanism of action for CDK4/6 inhibitors in combination with endocrine therapy, features of disease evolution and determinants of therapeutic response in the real-world setting remain unclear. Here, a cohort of patients treated with standard-of-care combi...

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Main Authors: Agnieszka K. Witkiewicz, Emily Schultz, Jianxin Wang, Deanna Hamilton, Ellis Levine, Tracey O’Connor, Erik S. Knudsen
Format: Article
Language:English
Published: Nature Portfolio 2023-09-01
Series:npj Precision Oncology
Online Access:https://doi.org/10.1038/s41698-023-00438-0
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author Agnieszka K. Witkiewicz
Emily Schultz
Jianxin Wang
Deanna Hamilton
Ellis Levine
Tracey O’Connor
Erik S. Knudsen
author_facet Agnieszka K. Witkiewicz
Emily Schultz
Jianxin Wang
Deanna Hamilton
Ellis Levine
Tracey O’Connor
Erik S. Knudsen
author_sort Agnieszka K. Witkiewicz
collection DOAJ
description Abstract Despite widespread use and a known mechanism of action for CDK4/6 inhibitors in combination with endocrine therapy, features of disease evolution and determinants of therapeutic response in the real-world setting remain unclear. Here, a cohort of patients treated with standard-of-care combination regimens was utilized to explore features of disease and determinants of progression-free survival (PFS) and overall survival (OS). In this cohort of 280 patients, >90% of patients were treated with palbociclib in combination with either an aromatase inhibitor (AI) or fulvestrant (FUL). Most of these patients had modified Scarff–Bloom–Richardson (SBR) scores, and ER, HER2, and PR immunohistochemistry. Both the SBR score and lack of PR expression were associated with shorter PFS in patients treated with AI combinations and remained significant in multivariate analyses (HR = 3.86, p = 0.008). Gene expression analyses indicated substantial changes in cell cycle and estrogen receptor signaling during the course of treatment. Furthermore, gene expression-based subtyping indicated that predominant subtypes changed with treatment and progression. The luminal B, HER2, and basal subtypes exhibited shorter PFS in CDK4/6 inhibitor combinations when assessed in the pretreatment biopsies; however, they were not associated with OS. Using unbiased approaches, cell cycle-associated gene sets were strongly associated with shorter PFS in pretreatment biopsies irrespective of endocrine therapy. Estrogen receptor signaling gene sets were associated with longer PFS particularly in the AI-treated cohort. Together, these data suggest that there are distinct pathological and biological features of HR+/HER2− breast cancer associated with response to CDK4/6 inhibitors. Clinical trial registration number: NCT04526587.
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spelling doaj.art-5de605e33d5e4dbfb69355f793daa9112023-11-19T12:14:14ZengNature Portfolionpj Precision Oncology2397-768X2023-09-017111710.1038/s41698-023-00438-0Determinants of response to CDK4/6 inhibitors in the real-world settingAgnieszka K. Witkiewicz0Emily Schultz1Jianxin Wang2Deanna Hamilton3Ellis Levine4Tracey O’Connor5Erik S. Knudsen6Department of Molecular and Cellular Biology, Roswell Park Comprehensive Cancer CenterDepartment of Molecular and Cellular Biology, Roswell Park Comprehensive Cancer CenterDepartment of Molecular and Cellular Biology, Roswell Park Comprehensive Cancer CenterDepartment of Molecular and Cellular Biology, Roswell Park Comprehensive Cancer CenterDepartment of Medicine, Roswell Park Comprehensive Cancer CenterDepartment of Medicine, Roswell Park Comprehensive Cancer CenterDepartment of Molecular and Cellular Biology, Roswell Park Comprehensive Cancer CenterAbstract Despite widespread use and a known mechanism of action for CDK4/6 inhibitors in combination with endocrine therapy, features of disease evolution and determinants of therapeutic response in the real-world setting remain unclear. Here, a cohort of patients treated with standard-of-care combination regimens was utilized to explore features of disease and determinants of progression-free survival (PFS) and overall survival (OS). In this cohort of 280 patients, >90% of patients were treated with palbociclib in combination with either an aromatase inhibitor (AI) or fulvestrant (FUL). Most of these patients had modified Scarff–Bloom–Richardson (SBR) scores, and ER, HER2, and PR immunohistochemistry. Both the SBR score and lack of PR expression were associated with shorter PFS in patients treated with AI combinations and remained significant in multivariate analyses (HR = 3.86, p = 0.008). Gene expression analyses indicated substantial changes in cell cycle and estrogen receptor signaling during the course of treatment. Furthermore, gene expression-based subtyping indicated that predominant subtypes changed with treatment and progression. The luminal B, HER2, and basal subtypes exhibited shorter PFS in CDK4/6 inhibitor combinations when assessed in the pretreatment biopsies; however, they were not associated with OS. Using unbiased approaches, cell cycle-associated gene sets were strongly associated with shorter PFS in pretreatment biopsies irrespective of endocrine therapy. Estrogen receptor signaling gene sets were associated with longer PFS particularly in the AI-treated cohort. Together, these data suggest that there are distinct pathological and biological features of HR+/HER2− breast cancer associated with response to CDK4/6 inhibitors. Clinical trial registration number: NCT04526587.https://doi.org/10.1038/s41698-023-00438-0
spellingShingle Agnieszka K. Witkiewicz
Emily Schultz
Jianxin Wang
Deanna Hamilton
Ellis Levine
Tracey O’Connor
Erik S. Knudsen
Determinants of response to CDK4/6 inhibitors in the real-world setting
npj Precision Oncology
title Determinants of response to CDK4/6 inhibitors in the real-world setting
title_full Determinants of response to CDK4/6 inhibitors in the real-world setting
title_fullStr Determinants of response to CDK4/6 inhibitors in the real-world setting
title_full_unstemmed Determinants of response to CDK4/6 inhibitors in the real-world setting
title_short Determinants of response to CDK4/6 inhibitors in the real-world setting
title_sort determinants of response to cdk4 6 inhibitors in the real world setting
url https://doi.org/10.1038/s41698-023-00438-0
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