sitePath: a visual tool to identify polymorphism clades and help find fixed and parallel mutations

sitePath: a visual tool to identify polymorphism clades and help find fixed and parallel mutations

Abstract Background Identifying polymorphism clades on phylogenetic trees could help detect punctual mutations that are associated with viral functions. With visualization tools coloring the tree, it is easy to visually find clades where most sequences have the same polymorphism state. However, with...

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Bibliographic Details
Main Authors: Chengyang Ji, Na Han, Yexiao Cheng, Jingzhe Shang, Shenghui Weng, Rong Yang, Hang-Yu Zhou, Aiping Wu
Format: Article
Language:English
Published: BMC 2022-11-01
Series:BMC Bioinformatics
Subjects:
Phylogenetics
Sequence analysis
Visualization
Online Access:https://doi.org/10.1186/s12859-022-05064-4

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