Operon Prediction Model Based on Markov Clustering Algorithm
There are many operon prediction models, but few methods can be applied to the operon prediction of new sequencing species effectively. In this paper, an operon prediction model based on Markov clustering algorithm is proposed. The model uses some generic attribute information of genomes and graph c...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
| Published: |
Bulgarian Academy of Sciences
2019-03-01
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| Series: | International Journal Bioautomation |
| Subjects: | |
| Online Access: | http://www.biomed.bas.bg/bioautomation/2019/vol_23.1/files/23.1_10.pdf |
| _version_ | 1811212630043394048 |
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| author | Zhenmei Zhang Yongquan Liang |
| author_facet | Zhenmei Zhang Yongquan Liang |
| author_sort | Zhenmei Zhang |
| collection | DOAJ |
| description | There are many operon prediction models, but few methods can be applied to the operon prediction of new sequencing species effectively. In this paper, an operon prediction model based on Markov clustering algorithm is proposed. The model uses some generic attribute information of genomes and graph clustering algorithm instead of classifier to predict operon. Similarly to most operon prediction models, E. coli K12 and B. subtilis str. 168 were used to assess the prediction capability of the proposed model, the experiment results show that the proposed model has better capability of operon prediction than some other classical operon prediction methods. |
| first_indexed | 2024-04-12T05:32:25Z |
| format | Article |
| id | doaj.art-5ed691d7ec5245b2b4c72b8f739439a4 |
| institution | Directory Open Access Journal |
| issn | 1314-1902 1314-2321 |
| language | English |
| last_indexed | 2024-04-12T05:32:25Z |
| publishDate | 2019-03-01 |
| publisher | Bulgarian Academy of Sciences |
| record_format | Article |
| series | International Journal Bioautomation |
| spelling | doaj.art-5ed691d7ec5245b2b4c72b8f739439a42022-12-22T03:46:01ZengBulgarian Academy of SciencesInternational Journal Bioautomation1314-19021314-23212019-03-0123110511610.7546/ijba.2019.23.1.105-116Operon Prediction Model Based on Markov Clustering AlgorithmZhenmei Zhang0Yongquan LiangCollege of Computer Science and Engineering, Shandong University of Science and Technology, Qingdao 266590, ChinaThere are many operon prediction models, but few methods can be applied to the operon prediction of new sequencing species effectively. In this paper, an operon prediction model based on Markov clustering algorithm is proposed. The model uses some generic attribute information of genomes and graph clustering algorithm instead of classifier to predict operon. Similarly to most operon prediction models, E. coli K12 and B. subtilis str. 168 were used to assess the prediction capability of the proposed model, the experiment results show that the proposed model has better capability of operon prediction than some other classical operon prediction methods.http://www.biomed.bas.bg/bioautomation/2019/vol_23.1/files/23.1_10.pdfOperon PredictionMarkov Clustering AlgorithmGeneric AttributeGraph Clustering |
| spellingShingle | Zhenmei Zhang Yongquan Liang Operon Prediction Model Based on Markov Clustering Algorithm International Journal Bioautomation Operon Prediction Markov Clustering Algorithm Generic Attribute Graph Clustering |
| title | Operon Prediction Model Based on Markov Clustering Algorithm |
| title_full | Operon Prediction Model Based on Markov Clustering Algorithm |
| title_fullStr | Operon Prediction Model Based on Markov Clustering Algorithm |
| title_full_unstemmed | Operon Prediction Model Based on Markov Clustering Algorithm |
| title_short | Operon Prediction Model Based on Markov Clustering Algorithm |
| title_sort | operon prediction model based on markov clustering algorithm |
| topic | Operon Prediction Markov Clustering Algorithm Generic Attribute Graph Clustering |
| url | http://www.biomed.bas.bg/bioautomation/2019/vol_23.1/files/23.1_10.pdf |
| work_keys_str_mv | AT zhenmeizhang operonpredictionmodelbasedonmarkovclusteringalgorithm AT yongquanliang operonpredictionmodelbasedonmarkovclusteringalgorithm |