Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genus
In this study, whole chloroplast genomes of five Salix species (S. argyracea, S. dasyclados, S. eriocephala, S. integra ‘Hakuro Nishiki’, and S. suchowensis) were sequenced. These chloroplast genomes were 155 ,605, 155, 763, 155, 552, 155, 538, and 155 ,550 bp in length, harboring 131 genes (77 unig...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-08-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1950055 |
| _version_ | 1797638785282867200 |
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| author | Jie Zhou Zhongyi Jiao Jiahui Guo Bao song Wang Jiwei Zheng |
| author_facet | Jie Zhou Zhongyi Jiao Jiahui Guo Bao song Wang Jiwei Zheng |
| author_sort | Jie Zhou |
| collection | DOAJ |
| description | In this study, whole chloroplast genomes of five Salix species (S. argyracea, S. dasyclados, S. eriocephala, S. integra ‘Hakuro Nishiki’, and S. suchowensis) were sequenced. These chloroplast genomes were 155 ,605, 155, 763, 155, 552, 155, 538, and 155 ,550 bp in length, harboring 131 genes (77 unigenes), 37 tRNA genes, 8 rRNA genes, and 86 mRNA genes, respectively. The genes ycf1, psaI, ycf2-2, rpoC2, rpl22, atpF, and ndhF were under positive selection among the 21 Salix species. psaI, ycf2-2, atpF, and ycf1-2 were under positive selection between the tree willow and shrub willow, and rpoC2, rpl22, and ycf1-2 were positively selected among the shrub genomes. The gene rps7 was most variable among the genomes. Phylogenetic analysis of 21 Salix species and Chosenia arbutifolia provide evidence that the cp genome data partially support the relationship with traditional taxonomic concepts in the Flora of China. This chloroplast genome elucidates Salix taxonomy and provides evidence for evolutionary research. |
| first_indexed | 2024-03-11T13:08:34Z |
| format | Article |
| id | doaj.art-5f91a2005b564636b2d850c556439f20 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:34Z |
| publishDate | 2021-08-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-5f91a2005b564636b2d850c556439f202023-11-03T14:28:28ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-08-01682348235210.1080/23802359.2021.19500551950055Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genusJie Zhou0Zhongyi Jiao1Jiahui Guo2Bao song Wang3Jiwei Zheng4National Willow Engineering Technology Research Center, Jiangsu Academy of ForestryNational Willow Engineering Technology Research Center, Jiangsu Academy of ForestryCollege of Biology and the Environment, Nanjing Forestry UniversityNational Willow Engineering Technology Research Center, Jiangsu Academy of ForestryNational Willow Engineering Technology Research Center, Jiangsu Academy of ForestryIn this study, whole chloroplast genomes of five Salix species (S. argyracea, S. dasyclados, S. eriocephala, S. integra ‘Hakuro Nishiki’, and S. suchowensis) were sequenced. These chloroplast genomes were 155 ,605, 155, 763, 155, 552, 155, 538, and 155 ,550 bp in length, harboring 131 genes (77 unigenes), 37 tRNA genes, 8 rRNA genes, and 86 mRNA genes, respectively. The genes ycf1, psaI, ycf2-2, rpoC2, rpl22, atpF, and ndhF were under positive selection among the 21 Salix species. psaI, ycf2-2, atpF, and ycf1-2 were under positive selection between the tree willow and shrub willow, and rpoC2, rpl22, and ycf1-2 were positively selected among the shrub genomes. The gene rps7 was most variable among the genomes. Phylogenetic analysis of 21 Salix species and Chosenia arbutifolia provide evidence that the cp genome data partially support the relationship with traditional taxonomic concepts in the Flora of China. This chloroplast genome elucidates Salix taxonomy and provides evidence for evolutionary research.http://dx.doi.org/10.1080/23802359.2021.1950055salixsalix argyraceasalix dasycladossalix eriocephalasalix integra ‘hakuro nishiki’salix suchowensischloroplast genomephylogenytaxonomy |
| spellingShingle | Jie Zhou Zhongyi Jiao Jiahui Guo Bao song Wang Jiwei Zheng Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genus Mitochondrial DNA. Part B. Resources salix salix argyracea salix dasyclados salix eriocephala salix integra ‘hakuro nishiki’ salix suchowensis chloroplast genome phylogeny taxonomy |
| title | Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genus |
| title_full | Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genus |
| title_fullStr | Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genus |
| title_full_unstemmed | Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genus |
| title_short | Complete chloroplast genome sequencing of five Salix species and its application in the phylogeny and taxonomy of the genus |
| title_sort | complete chloroplast genome sequencing of five salix species and its application in the phylogeny and taxonomy of the genus |
| topic | salix salix argyracea salix dasyclados salix eriocephala salix integra ‘hakuro nishiki’ salix suchowensis chloroplast genome phylogeny taxonomy |
| url | http://dx.doi.org/10.1080/23802359.2021.1950055 |
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