Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filicula
Pomatosace filicula (Primulaceae) is an alpine biennial endemic to the Qinghai-Tibet Plateau, which is regarded as a kind of traditional Tibetan medicine. We assembled the whole chloroplast genome sequence of this endangered species based on Illumina pair-end sequencing data. The complete chloroplas...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1591173 |
| _version_ | 1797639923826688000 |
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| author | Lei Wu Zheng Du Quanjun Hu |
| author_facet | Lei Wu Zheng Du Quanjun Hu |
| author_sort | Lei Wu |
| collection | DOAJ |
| description | Pomatosace filicula (Primulaceae) is an alpine biennial endemic to the Qinghai-Tibet Plateau, which is regarded as a kind of traditional Tibetan medicine. We assembled the whole chloroplast genome sequence of this endangered species based on Illumina pair-end sequencing data. The complete chloroplast genome was estimated to be 151,277 bp in length, comprising a large single copy region of 82,039 bp and a small single copy region of 23,848 bp, separated by a pair of 22,695 bp inverted repeat regions. The genome contained 121 genes, including 83 protein-coding genes (74 PCG species), 29 tRNA genes (24 tRNA species), and eight ribosomal RNA genes (four rRNA species). The overall AT content of P. filicula chloroplast genome is estimated to be 62.59%. This genetic resource will facilitate further conservation genetic studies of P. filicula based on designing new chloroplast DNA markers. |
| first_indexed | 2024-03-11T13:23:33Z |
| format | Article |
| id | doaj.art-6008d701fb004db7b592be74d6f8a24b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:33Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-6008d701fb004db7b592be74d6f8a24b2023-11-03T10:06:42ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411211121210.1080/23802359.2019.15911731591173Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filiculaLei Wu0Zheng Du1Quanjun Hu2College of Life Sciences, Sichuan UniversityNational Supercomputing Center in ShenzhenCollege of Life Sciences, Sichuan UniversityPomatosace filicula (Primulaceae) is an alpine biennial endemic to the Qinghai-Tibet Plateau, which is regarded as a kind of traditional Tibetan medicine. We assembled the whole chloroplast genome sequence of this endangered species based on Illumina pair-end sequencing data. The complete chloroplast genome was estimated to be 151,277 bp in length, comprising a large single copy region of 82,039 bp and a small single copy region of 23,848 bp, separated by a pair of 22,695 bp inverted repeat regions. The genome contained 121 genes, including 83 protein-coding genes (74 PCG species), 29 tRNA genes (24 tRNA species), and eight ribosomal RNA genes (four rRNA species). The overall AT content of P. filicula chloroplast genome is estimated to be 62.59%. This genetic resource will facilitate further conservation genetic studies of P. filicula based on designing new chloroplast DNA markers.http://dx.doi.org/10.1080/23802359.2019.1591173pomatosace filiculachloroplast genomeendangered tibetan medicine |
| spellingShingle | Lei Wu Zheng Du Quanjun Hu Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filicula Mitochondrial DNA. Part B. Resources pomatosace filicula chloroplast genome endangered tibetan medicine |
| title | Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filicula |
| title_full | Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filicula |
| title_fullStr | Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filicula |
| title_full_unstemmed | Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filicula |
| title_short | Characterization of the complete chloroplast genome of the Qinghai-Tibet Plateau endemic Pomatosace filicula |
| title_sort | characterization of the complete chloroplast genome of the qinghai tibet plateau endemic pomatosace filicula |
| topic | pomatosace filicula chloroplast genome endangered tibetan medicine |
| url | http://dx.doi.org/10.1080/23802359.2019.1591173 |
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