Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia
To comprehensively reflect the roles of Rpl11 on the transcriptome of zebrafish model of Diamond-Blackfan Anemia (DBA), we performed whole-genome transcriptome sequencing on the Illumina Hi-Seq 2000 sequencing platform. Two different transcriptomes of zebrafish Rpl11-deficient and control Morpholino...
| Main Authors: | , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2014-12-01
|
| Series: | Genomics Data |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2213596014000415 |
| _version_ | 1828814928834723840 |
|---|---|
| author | Zhaojun Zhang Haibo Jia Qian Zhang Yang Wan Binfeng Song Qiong Jia Hanzhi Liu Xiaofan Zhu Xiangdong Fang |
| author_facet | Zhaojun Zhang Haibo Jia Qian Zhang Yang Wan Binfeng Song Qiong Jia Hanzhi Liu Xiaofan Zhu Xiangdong Fang |
| author_sort | Zhaojun Zhang |
| collection | DOAJ |
| description | To comprehensively reflect the roles of Rpl11 on the transcriptome of zebrafish model of Diamond-Blackfan Anemia (DBA), we performed whole-genome transcriptome sequencing on the Illumina Hi-Seq 2000 sequencing platform. Two different transcriptomes of zebrafish Rpl11-deficient and control Morpholino (Mo) embryos were collected and analyzed. The experimental design and methods, including sample preparation, RNA-Seq data evaluation and treatment, were described in details so that representative high-throughput sequencing data were acquired for assessing the actual impacts of Rpl11 on zebrafish embryos. We provided the accession number GSE51326 for easy access to the database. |
| first_indexed | 2024-12-12T10:34:37Z |
| format | Article |
| id | doaj.art-61c0fc63fdfa4e7faca4c47f075afabc |
| institution | Directory Open Access Journal |
| issn | 2213-5960 |
| language | English |
| last_indexed | 2024-12-12T10:34:37Z |
| publishDate | 2014-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Genomics Data |
| spelling | doaj.art-61c0fc63fdfa4e7faca4c47f075afabc2022-12-22T00:27:16ZengElsevierGenomics Data2213-59602014-12-012C17317510.1016/j.gdata.2014.06.008Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan AnemiaZhaojun Zhang0Haibo Jia1Qian Zhang2Yang Wan3Binfeng Song4Qiong Jia5Hanzhi Liu6Xiaofan Zhu7Xiangdong Fang8CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, ChinaKey Laboratory of Molecular Biophysics of Ministry of Education, College of Life Science and Technology Center for Human Genome Research, Huazhong University of Science and Technology, Wuhan, Hubei 430074, ChinaCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, ChinaState Key Laboratory of Experimental Hematology, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300020, ChinaKey Laboratory of Molecular Biophysics of Ministry of Education, College of Life Science and Technology Center for Human Genome Research, Huazhong University of Science and Technology, Wuhan, Hubei 430074, ChinaKey Laboratory of Molecular Biophysics of Ministry of Education, College of Life Science and Technology Center for Human Genome Research, Huazhong University of Science and Technology, Wuhan, Hubei 430074, ChinaState Key Laboratory of Experimental Hematology, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300020, ChinaState Key Laboratory of Experimental Hematology, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin 300020, ChinaCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, ChinaTo comprehensively reflect the roles of Rpl11 on the transcriptome of zebrafish model of Diamond-Blackfan Anemia (DBA), we performed whole-genome transcriptome sequencing on the Illumina Hi-Seq 2000 sequencing platform. Two different transcriptomes of zebrafish Rpl11-deficient and control Morpholino (Mo) embryos were collected and analyzed. The experimental design and methods, including sample preparation, RNA-Seq data evaluation and treatment, were described in details so that representative high-throughput sequencing data were acquired for assessing the actual impacts of Rpl11 on zebrafish embryos. We provided the accession number GSE51326 for easy access to the database.http://www.sciencedirect.com/science/article/pii/S2213596014000415TranscriptomeZebrafishDBAHigh-Seq 2000IPA |
| spellingShingle | Zhaojun Zhang Haibo Jia Qian Zhang Yang Wan Binfeng Song Qiong Jia Hanzhi Liu Xiaofan Zhu Xiangdong Fang Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia Genomics Data Transcriptome Zebrafish DBA High-Seq 2000 IPA |
| title | Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia |
| title_full | Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia |
| title_fullStr | Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia |
| title_full_unstemmed | Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia |
| title_short | Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia |
| title_sort | transcriptome analysis of rpl11 deficient zebrafish model of diamond blackfan anemia |
| topic | Transcriptome Zebrafish DBA High-Seq 2000 IPA |
| url | http://www.sciencedirect.com/science/article/pii/S2213596014000415 |
| work_keys_str_mv | AT zhaojunzhang transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT haibojia transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT qianzhang transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT yangwan transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT binfengsong transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT qiongjia transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT hanzhiliu transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT xiaofanzhu transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia AT xiangdongfang transcriptomeanalysisofrpl11deficientzebrafishmodelofdiamondblackfananemia |