Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission
Severe fever with thrombocytopenia syndrome (SFTS) is a novel tick-borne infectious disease, therefore, the information on the whole genome of the SFTS virus (SFTSV) is still limited. This study demonstrates a nearly whole genome of the SFTSV identified in Osaka in 2017 and 2018 by next-generation s...
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MDPI AG
2021-01-01
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| Online Access: | https://www.mdpi.com/1999-4915/13/2/177 |
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| author | Ryo Ikemori Ikuko Aoyama Tadahiro Sasaki Hirono Takabayashi Kazutoshi Morisada Masaru Kinoshita Kazuyoshi Ikuta Takahiro Yumisashi Kazushi Motomura |
| author_facet | Ryo Ikemori Ikuko Aoyama Tadahiro Sasaki Hirono Takabayashi Kazutoshi Morisada Masaru Kinoshita Kazuyoshi Ikuta Takahiro Yumisashi Kazushi Motomura |
| author_sort | Ryo Ikemori |
| collection | DOAJ |
| description | Severe fever with thrombocytopenia syndrome (SFTS) is a novel tick-borne infectious disease, therefore, the information on the whole genome of the SFTS virus (SFTSV) is still limited. This study demonstrates a nearly whole genome of the SFTSV identified in Osaka in 2017 and 2018 by next-generation sequencing (NGS). The evolutionary lineage of two genotypes, C5 and J1, was identified in Osaka. The first case in Osaka belongs to suspect reassortment (L:C5, M:C5, S:C4), the other is genotype J1 (L: J1, M: J1, S: J1) according to the classification by a Japanese group. C5 was identified in China, indicating that C5 identified in this study may be transmitted by birds between China and Japan. This study revealed that different SFTSV genotypes were distributed in two local areas, suggesting the separate or focal transmission patterns in Osaka. |
| first_indexed | 2024-03-09T03:42:27Z |
| format | Article |
| id | doaj.art-61c66bc781b6426794f37e26406cf8e7 |
| institution | Directory Open Access Journal |
| issn | 1999-4915 |
| language | English |
| last_indexed | 2024-03-09T03:42:27Z |
| publishDate | 2021-01-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Viruses |
| spelling | doaj.art-61c66bc781b6426794f37e26406cf8e72023-12-03T14:39:20ZengMDPI AGViruses1999-49152021-01-0113217710.3390/v13020177Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV TransmissionRyo Ikemori0Ikuko Aoyama1Tadahiro Sasaki2Hirono Takabayashi3Kazutoshi Morisada4Masaru Kinoshita5Kazuyoshi Ikuta6Takahiro Yumisashi7Kazushi Motomura8Virology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, JapanVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, JapanVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, JapanFujiidera Public Health Center, Fujiidera, Osaka 583-0024, JapanTakatsuki-City Public Health Center, Takatsuki, Osaka 569-0052, JapanDepartment of Health and Medical Care, Osaka Prefectural Government, Osaka 540-8570, JapanVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, JapanVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, JapanVirology Section, Division of Microbiology, Osaka Institute of Public Health, Osaka 537-0025, JapanSevere fever with thrombocytopenia syndrome (SFTS) is a novel tick-borne infectious disease, therefore, the information on the whole genome of the SFTS virus (SFTSV) is still limited. This study demonstrates a nearly whole genome of the SFTSV identified in Osaka in 2017 and 2018 by next-generation sequencing (NGS). The evolutionary lineage of two genotypes, C5 and J1, was identified in Osaka. The first case in Osaka belongs to suspect reassortment (L:C5, M:C5, S:C4), the other is genotype J1 (L: J1, M: J1, S: J1) according to the classification by a Japanese group. C5 was identified in China, indicating that C5 identified in this study may be transmitted by birds between China and Japan. This study revealed that different SFTSV genotypes were distributed in two local areas, suggesting the separate or focal transmission patterns in Osaka.https://www.mdpi.com/1999-4915/13/2/177SFTSgenotypewhole genome |
| spellingShingle | Ryo Ikemori Ikuko Aoyama Tadahiro Sasaki Hirono Takabayashi Kazutoshi Morisada Masaru Kinoshita Kazuyoshi Ikuta Takahiro Yumisashi Kazushi Motomura Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission Viruses SFTS genotype whole genome |
| title | Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission |
| title_full | Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission |
| title_fullStr | Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission |
| title_full_unstemmed | Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission |
| title_short | Two Different Strains of Severe Fever with Thrombocytopenia Syndrome Virus (SFTSV) in North and South Osaka by Phylogenetic Analysis of Evolutionary Lineage: Evidence for Independent SFTSV Transmission |
| title_sort | two different strains of severe fever with thrombocytopenia syndrome virus sftsv in north and south osaka by phylogenetic analysis of evolutionary lineage evidence for independent sftsv transmission |
| topic | SFTS genotype whole genome |
| url | https://www.mdpi.com/1999-4915/13/2/177 |
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