Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i>
AbstractCoffee is one of the most important beverages and trade products in the world. Among the multiple research initiatives focused on coffee sustainability, plant breeding provides the best means to increase phenotypic performance and release cultivars that could meet market dema...
| Main Authors: | , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Oxford University Press
2023-03-01
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| Series: | G3: Genes, Genomes, Genetics |
| Online Access: | https://academic.oup.com/g3journal/article-lookup/doi/10.1093/g3journal/jkad062 |
| _version_ | 1797788871358939136 |
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| author | Paul Adunola Maria Amélia G Ferrão Romário G Ferrão Aymbire F A da Fonseca Paulo S Volpi Marcone Comério Abraão C Verdin Filho Patricio R Munoz Luís Felipe V Ferrão |
| author_facet | Paul Adunola Maria Amélia G Ferrão Romário G Ferrão Aymbire F A da Fonseca Paulo S Volpi Marcone Comério Abraão C Verdin Filho Patricio R Munoz Luís Felipe V Ferrão |
| author_sort | Paul Adunola |
| collection | DOAJ |
| description |
AbstractCoffee is one of the most important beverages and trade products in the world. Among the multiple research initiatives focused on coffee sustainability, plant breeding provides the best means to increase phenotypic performance and release cultivars that could meet market demands. Since coffee is well adapted to a diversity of tropical environments, an important question for those confronting the problem of evaluating phenotypic performance is the relevance of genotype-by-environment interaction. As a perennial crop with a long juvenile phase, coffee is subjected to significant temporal and spatial variations. Such facts not only hinder the selection of promising materials but also cause a majority of complaints among growers. In this study, we hypothesized that trait stability in coffee is genetically controlled and therefore is predictable using molecular information. To test it, we used genome-based methods to predict stability metrics computed with the primary goal of selecting coffee genotypes that combine high phenotypic performance and stability for target environments. Using 2 populations of Coffea canephora |
| first_indexed | 2024-03-13T01:42:43Z |
| format | Article |
| id | doaj.art-623a944142aa4d7f97c787257c6afd4a |
| institution | Directory Open Access Journal |
| issn | 2160-1836 |
| language | English |
| last_indexed | 2024-03-13T01:42:43Z |
| publishDate | 2023-03-01 |
| publisher | Oxford University Press |
| record_format | Article |
| series | G3: Genes, Genomes, Genetics |
| spelling | doaj.art-623a944142aa4d7f97c787257c6afd4a2023-07-03T11:21:20ZengOxford University PressG3: Genes, Genomes, Genetics2160-18362023-03-0113610.1093/g3journal/jkad062Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i> Paul Adunola0https://orcid.org/0000-0003-1426-5248Maria Amélia G Ferrão1Romário G Ferrão2Aymbire F A da Fonseca3Paulo S Volpi4Marcone Comério5Abraão C Verdin Filho6https://orcid.org/0000-0001-8800-2382Patricio R Munoz7https://orcid.org/0000-0001-8973-9351Luís Felipe V Ferrão8https://orcid.org/0000-0002-9655-4838Blueberry Breeding and Genomics Lab, Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USAInstituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural—Incaper, Vitoria, ES 29052-010, BrazilInstituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural—Incaper, Vitoria, ES 29052-010, BrazilInstituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural—Incaper, Vitoria, ES 29052-010, BrazilInstituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural—Incaper, Vitoria, ES 29052-010, BrazilInstituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural—Incaper, Vitoria, ES 29052-010, BrazilInstituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural—Incaper, Vitoria, ES 29052-010, BrazilBlueberry Breeding and Genomics Lab, Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USABlueberry Breeding and Genomics Lab, Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA AbstractCoffee is one of the most important beverages and trade products in the world. Among the multiple research initiatives focused on coffee sustainability, plant breeding provides the best means to increase phenotypic performance and release cultivars that could meet market demands. Since coffee is well adapted to a diversity of tropical environments, an important question for those confronting the problem of evaluating phenotypic performance is the relevance of genotype-by-environment interaction. As a perennial crop with a long juvenile phase, coffee is subjected to significant temporal and spatial variations. Such facts not only hinder the selection of promising materials but also cause a majority of complaints among growers. In this study, we hypothesized that trait stability in coffee is genetically controlled and therefore is predictable using molecular information. To test it, we used genome-based methods to predict stability metrics computed with the primary goal of selecting coffee genotypes that combine high phenotypic performance and stability for target environments. Using 2 populations of Coffea canephorahttps://academic.oup.com/g3journal/article-lookup/doi/10.1093/g3journal/jkad062 |
| spellingShingle | Paul Adunola Maria Amélia G Ferrão Romário G Ferrão Aymbire F A da Fonseca Paulo S Volpi Marcone Comério Abraão C Verdin Filho Patricio R Munoz Luís Felipe V Ferrão Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i> G3: Genes, Genomes, Genetics |
| title | Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i>
|
| title_full | Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i>
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| title_fullStr | Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i>
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| title_full_unstemmed | Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i>
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| title_short | Genomic selection for genotype performance and environmental stability in <i>Coffea canephora</i>
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| title_sort | genomic selection for genotype performance and environmental stability in i coffea canephora i |
| url | https://academic.oup.com/g3journal/article-lookup/doi/10.1093/g3journal/jkad062 |
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