Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources
Ligustrum quihoui is popular as landscape plants used as hedges in gardens. In this study, we sequenced the complete chloroplast genome of L. quihoui based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of L. quihoui is 163,575 bp in length consis...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1687349 |
| _version_ | 1797639563768758272 |
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| author | Lei Wang Ning Wang Jiahui Sun |
| author_facet | Lei Wang Ning Wang Jiahui Sun |
| author_sort | Lei Wang |
| collection | DOAJ |
| description | Ligustrum quihoui is popular as landscape plants used as hedges in gardens. In this study, we sequenced the complete chloroplast genome of L. quihoui based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of L. quihoui is 163,575 bp in length consisting of large and small single-copy regions of length 88,072 and 11,493 bp, separated by two IR regions of 32,005 bp. De novo assembly and annotation showed the presence of 115 unique genes with 81 protein-coding genes, 30 tRNA genes, and four rRNA genes. A total of 62 perfect chloroplast simple sequence repeats were analyzed in the L. quihoui. A maximum-likelihood phylogenomic analysis showed that L. quihoui was sister to L. gracile. |
| first_indexed | 2024-03-11T13:19:28Z |
| format | Article |
| id | doaj.art-625bf4356cb74457add27343ab83f050 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:28Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-625bf4356cb74457add27343ab83f0502023-11-03T10:38:51ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01424047404810.1080/23802359.2019.16873491687349Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resourcesLei Wang0Ning Wang1Jiahui Sun2Foresty CollegeForesty CollegeChina Academy of Chinese Medical SciencesLigustrum quihoui is popular as landscape plants used as hedges in gardens. In this study, we sequenced the complete chloroplast genome of L. quihoui based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of L. quihoui is 163,575 bp in length consisting of large and small single-copy regions of length 88,072 and 11,493 bp, separated by two IR regions of 32,005 bp. De novo assembly and annotation showed the presence of 115 unique genes with 81 protein-coding genes, 30 tRNA genes, and four rRNA genes. A total of 62 perfect chloroplast simple sequence repeats were analyzed in the L. quihoui. A maximum-likelihood phylogenomic analysis showed that L. quihoui was sister to L. gracile.http://dx.doi.org/10.1080/23802359.2019.1687349chloroplast genomeligustrum quihouigenomic resourcesssr |
| spellingShingle | Lei Wang Ning Wang Jiahui Sun Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources Mitochondrial DNA. Part B. Resources chloroplast genome ligustrum quihoui genomic resources ssr |
| title | Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources |
| title_full | Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources |
| title_fullStr | Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources |
| title_full_unstemmed | Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources |
| title_short | Complete chloroplast genome sequence of Ligustrum quihoui (Oleaceae): genome structure and genomic resources |
| title_sort | complete chloroplast genome sequence of ligustrum quihoui oleaceae genome structure and genomic resources |
| topic | chloroplast genome ligustrum quihoui genomic resources ssr |
| url | http://dx.doi.org/10.1080/23802359.2019.1687349 |
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