FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis

FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE1 (FAR1), which play pivotal roles in plant growth and development, are essential for the photo-induced phyA nuclear accumulation and subsequent photoreaction. The FAR1/FHY3 family has been systematically characterized in...

Full description

Bibliographic Details
Main Authors: Jiahao Dai, Jin Sun, Wenjing Peng, Wenhai Liao, Yuhan Zhou, Xue-Rong Zhou, Yuan Qin, Yan Cheng, Shijiang Cao
Format: Article
Language:English
Published: Frontiers Media S.A. 2022-05-01
Series:Frontiers in Plant Science
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fpls.2022.883654/full
_version_ 1818194403706011648
author Jiahao Dai
Jiahao Dai
Jin Sun
Wenjing Peng
Wenhai Liao
Wenhai Liao
Yuhan Zhou
Xue-Rong Zhou
Yuan Qin
Yuan Qin
Yuan Qin
Yuan Qin
Yan Cheng
Yan Cheng
Yan Cheng
Shijiang Cao
Shijiang Cao
author_facet Jiahao Dai
Jiahao Dai
Jin Sun
Wenjing Peng
Wenhai Liao
Wenhai Liao
Yuhan Zhou
Xue-Rong Zhou
Yuan Qin
Yuan Qin
Yuan Qin
Yuan Qin
Yan Cheng
Yan Cheng
Yan Cheng
Shijiang Cao
Shijiang Cao
author_sort Jiahao Dai
collection DOAJ
description FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE1 (FAR1), which play pivotal roles in plant growth and development, are essential for the photo-induced phyA nuclear accumulation and subsequent photoreaction. The FAR1/FHY3 family has been systematically characterized in some plants, but not in Eucalyptus grandis. In this study, genome-wide identification of FAR1/FHY3 genes in E. grandis was performed using bioinformatic methods. The gene structures, chromosomal locations, the encoded protein characteristics, 3D models, phylogenetic relationships, and promoter cis-elements were analyzed with this gene family. A total of 33 FAR1/FHY3 genes were identified in E. grandis, which were divided into three groups based on their phylogenetic relationships. A total of 21 pairs of duplicated repeats were identified by homology analysis. Gene expression analysis showed that most FAR1/FHY3 genes were differentially expressed in a spatial-specific manner. Gene expression analysis also showed that FAR1/FHY3 genes responded to salt and temperature stresses. These results and observation will enhance our understanding of the evolution and function of the FAR1/FHY3 genes in E. grandis and facilitate further studies on the molecular mechanism of the FAR1/FHY3 gene family in growth and development regulations, especially in response to salt and temperature.
first_indexed 2024-12-12T01:01:45Z
format Article
id doaj.art-62767f8d2fe34adb92032d04f346382a
institution Directory Open Access Journal
issn 1664-462X
language English
last_indexed 2024-12-12T01:01:45Z
publishDate 2022-05-01
publisher Frontiers Media S.A.
record_format Article
series Frontiers in Plant Science
spelling doaj.art-62767f8d2fe34adb92032d04f346382a2022-12-22T00:43:42ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2022-05-011310.3389/fpls.2022.883654883654FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandisJiahao Dai0Jiahao Dai1Jin Sun2Wenjing Peng3Wenhai Liao4Wenhai Liao5Yuhan Zhou6Xue-Rong Zhou7Yuan Qin8Yuan Qin9Yuan Qin10Yuan Qin11Yan Cheng12Yan Cheng13Yan Cheng14Shijiang Cao15Shijiang Cao16College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaUniversity Key Laboratory of Forest Stress Physiology, Ecology and Molecular Biology of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaUniversity Key Laboratory of Forest Stress Physiology, Ecology and Molecular Biology of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaAgriculture and Food, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, AustraliaFujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaKey Laboratory of Genetics, Breeding and Multiple Utilization of Corps, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaGuangxi Key Lab of Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, ChinaState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, Nanning, ChinaFujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaKey Laboratory of Genetics, Breeding and Multiple Utilization of Corps, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaUniversity Key Laboratory of Forest Stress Physiology, Ecology and Molecular Biology of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaFAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE1 (FAR1), which play pivotal roles in plant growth and development, are essential for the photo-induced phyA nuclear accumulation and subsequent photoreaction. The FAR1/FHY3 family has been systematically characterized in some plants, but not in Eucalyptus grandis. In this study, genome-wide identification of FAR1/FHY3 genes in E. grandis was performed using bioinformatic methods. The gene structures, chromosomal locations, the encoded protein characteristics, 3D models, phylogenetic relationships, and promoter cis-elements were analyzed with this gene family. A total of 33 FAR1/FHY3 genes were identified in E. grandis, which were divided into three groups based on their phylogenetic relationships. A total of 21 pairs of duplicated repeats were identified by homology analysis. Gene expression analysis showed that most FAR1/FHY3 genes were differentially expressed in a spatial-specific manner. Gene expression analysis also showed that FAR1/FHY3 genes responded to salt and temperature stresses. These results and observation will enhance our understanding of the evolution and function of the FAR1/FHY3 genes in E. grandis and facilitate further studies on the molecular mechanism of the FAR1/FHY3 gene family in growth and development regulations, especially in response to salt and temperature.https://www.frontiersin.org/articles/10.3389/fpls.2022.883654/fullFAR1/FHY3transcription factorsEucalyptus grandissalt stresstemperature stress
spellingShingle Jiahao Dai
Jiahao Dai
Jin Sun
Wenjing Peng
Wenhai Liao
Wenhai Liao
Yuhan Zhou
Xue-Rong Zhou
Yuan Qin
Yuan Qin
Yuan Qin
Yuan Qin
Yan Cheng
Yan Cheng
Yan Cheng
Shijiang Cao
Shijiang Cao
FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis
Frontiers in Plant Science
FAR1/FHY3
transcription factors
Eucalyptus grandis
salt stress
temperature stress
title FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis
title_full FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis
title_fullStr FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis
title_full_unstemmed FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis
title_short FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis
title_sort far1 fhy3 transcription factors positively regulate the salt and temperature stress responses in eucalyptus grandis
topic FAR1/FHY3
transcription factors
Eucalyptus grandis
salt stress
temperature stress
url https://www.frontiersin.org/articles/10.3389/fpls.2022.883654/full
work_keys_str_mv AT jiahaodai far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT jiahaodai far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT jinsun far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT wenjingpeng far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT wenhailiao far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT wenhailiao far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yuhanzhou far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT xuerongzhou far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yuanqin far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yuanqin far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yuanqin far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yuanqin far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yancheng far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yancheng far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT yancheng far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT shijiangcao far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis
AT shijiangcao far1fhy3transcriptionfactorspositivelyregulatethesaltandtemperaturestressresponsesineucalyptusgrandis