FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis
FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE1 (FAR1), which play pivotal roles in plant growth and development, are essential for the photo-induced phyA nuclear accumulation and subsequent photoreaction. The FAR1/FHY3 family has been systematically characterized in...
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Frontiers Media S.A.
2022-05-01
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Online Access: | https://www.frontiersin.org/articles/10.3389/fpls.2022.883654/full |
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author | Jiahao Dai Jiahao Dai Jin Sun Wenjing Peng Wenhai Liao Wenhai Liao Yuhan Zhou Xue-Rong Zhou Yuan Qin Yuan Qin Yuan Qin Yuan Qin Yan Cheng Yan Cheng Yan Cheng Shijiang Cao Shijiang Cao |
author_facet | Jiahao Dai Jiahao Dai Jin Sun Wenjing Peng Wenhai Liao Wenhai Liao Yuhan Zhou Xue-Rong Zhou Yuan Qin Yuan Qin Yuan Qin Yuan Qin Yan Cheng Yan Cheng Yan Cheng Shijiang Cao Shijiang Cao |
author_sort | Jiahao Dai |
collection | DOAJ |
description | FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE1 (FAR1), which play pivotal roles in plant growth and development, are essential for the photo-induced phyA nuclear accumulation and subsequent photoreaction. The FAR1/FHY3 family has been systematically characterized in some plants, but not in Eucalyptus grandis. In this study, genome-wide identification of FAR1/FHY3 genes in E. grandis was performed using bioinformatic methods. The gene structures, chromosomal locations, the encoded protein characteristics, 3D models, phylogenetic relationships, and promoter cis-elements were analyzed with this gene family. A total of 33 FAR1/FHY3 genes were identified in E. grandis, which were divided into three groups based on their phylogenetic relationships. A total of 21 pairs of duplicated repeats were identified by homology analysis. Gene expression analysis showed that most FAR1/FHY3 genes were differentially expressed in a spatial-specific manner. Gene expression analysis also showed that FAR1/FHY3 genes responded to salt and temperature stresses. These results and observation will enhance our understanding of the evolution and function of the FAR1/FHY3 genes in E. grandis and facilitate further studies on the molecular mechanism of the FAR1/FHY3 gene family in growth and development regulations, especially in response to salt and temperature. |
first_indexed | 2024-12-12T01:01:45Z |
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id | doaj.art-62767f8d2fe34adb92032d04f346382a |
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issn | 1664-462X |
language | English |
last_indexed | 2024-12-12T01:01:45Z |
publishDate | 2022-05-01 |
publisher | Frontiers Media S.A. |
record_format | Article |
series | Frontiers in Plant Science |
spelling | doaj.art-62767f8d2fe34adb92032d04f346382a2022-12-22T00:43:42ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2022-05-011310.3389/fpls.2022.883654883654FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandisJiahao Dai0Jiahao Dai1Jin Sun2Wenjing Peng3Wenhai Liao4Wenhai Liao5Yuhan Zhou6Xue-Rong Zhou7Yuan Qin8Yuan Qin9Yuan Qin10Yuan Qin11Yan Cheng12Yan Cheng13Yan Cheng14Shijiang Cao15Shijiang Cao16College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaUniversity Key Laboratory of Forest Stress Physiology, Ecology and Molecular Biology of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaUniversity Key Laboratory of Forest Stress Physiology, Ecology and Molecular Biology of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaAgriculture and Food, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, AustraliaFujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaKey Laboratory of Genetics, Breeding and Multiple Utilization of Corps, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaGuangxi Key Lab of Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, ChinaState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, Nanning, ChinaFujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign School of Integrative Biology Joint Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaKey Laboratory of Genetics, Breeding and Multiple Utilization of Corps, College of Life Science, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, ChinaCollege of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaUniversity Key Laboratory of Forest Stress Physiology, Ecology and Molecular Biology of Fujian Province, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, ChinaFAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE1 (FAR1), which play pivotal roles in plant growth and development, are essential for the photo-induced phyA nuclear accumulation and subsequent photoreaction. The FAR1/FHY3 family has been systematically characterized in some plants, but not in Eucalyptus grandis. In this study, genome-wide identification of FAR1/FHY3 genes in E. grandis was performed using bioinformatic methods. The gene structures, chromosomal locations, the encoded protein characteristics, 3D models, phylogenetic relationships, and promoter cis-elements were analyzed with this gene family. A total of 33 FAR1/FHY3 genes were identified in E. grandis, which were divided into three groups based on their phylogenetic relationships. A total of 21 pairs of duplicated repeats were identified by homology analysis. Gene expression analysis showed that most FAR1/FHY3 genes were differentially expressed in a spatial-specific manner. Gene expression analysis also showed that FAR1/FHY3 genes responded to salt and temperature stresses. These results and observation will enhance our understanding of the evolution and function of the FAR1/FHY3 genes in E. grandis and facilitate further studies on the molecular mechanism of the FAR1/FHY3 gene family in growth and development regulations, especially in response to salt and temperature.https://www.frontiersin.org/articles/10.3389/fpls.2022.883654/fullFAR1/FHY3transcription factorsEucalyptus grandissalt stresstemperature stress |
spellingShingle | Jiahao Dai Jiahao Dai Jin Sun Wenjing Peng Wenhai Liao Wenhai Liao Yuhan Zhou Xue-Rong Zhou Yuan Qin Yuan Qin Yuan Qin Yuan Qin Yan Cheng Yan Cheng Yan Cheng Shijiang Cao Shijiang Cao FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis Frontiers in Plant Science FAR1/FHY3 transcription factors Eucalyptus grandis salt stress temperature stress |
title | FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis |
title_full | FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis |
title_fullStr | FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis |
title_full_unstemmed | FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis |
title_short | FAR1/FHY3 Transcription Factors Positively Regulate the Salt and Temperature Stress Responses in Eucalyptus grandis |
title_sort | far1 fhy3 transcription factors positively regulate the salt and temperature stress responses in eucalyptus grandis |
topic | FAR1/FHY3 transcription factors Eucalyptus grandis salt stress temperature stress |
url | https://www.frontiersin.org/articles/10.3389/fpls.2022.883654/full |
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