Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosome

Abstract The Wnt enhanceosome is responsible for transactivation of Wnt-responsive genes and a promising therapeutic target for treatment of numerous cancers with Adenomatous Polyposis Coli (APC) or β-catenin mutations. How the Wnt enhanceosome is assembled remains poorly understood. Here we show th...

Full description

Bibliographic Details
Main Authors: Hongyang Wang, Mariann Bienz, Xiao-Xue Yan, Wenqing Xu
Format: Article
Language:English
Published: Nature Portfolio 2023-06-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-023-39439-9
_version_ 1797795579519041536
author Hongyang Wang
Mariann Bienz
Xiao-Xue Yan
Wenqing Xu
author_facet Hongyang Wang
Mariann Bienz
Xiao-Xue Yan
Wenqing Xu
author_sort Hongyang Wang
collection DOAJ
description Abstract The Wnt enhanceosome is responsible for transactivation of Wnt-responsive genes and a promising therapeutic target for treatment of numerous cancers with Adenomatous Polyposis Coli (APC) or β-catenin mutations. How the Wnt enhanceosome is assembled remains poorly understood. Here we show that B-cell lymphoma 9 protein (BCL9), Pygopus (Pygo), LIM domain-binding protein 1 (LDB1) and single-stranded DNA-binding protein (SSBP) form a stable core complex within the Wnt enhanceosome. Their mutual interactions rely on a highly conserved N-terminal asparagine proline phenylalanine (NPF) motif of Pygo, through which the BCL9-Pygo complex binds to the LDB-SSBP core complex. Our crystal structure of a ternary complex comprising the N-terminus of human Pygo2, LDB1 and SSBP2 reveals a single LDB1-SSBP2 complex binding simultaneously to two Pygo2 molecules via their NPF motifs. These interactions critically depend on the NPF motifs which bind to a deep groove formed between LDB1 and SSBP2, potentially constituting a binding site for drugs blocking Wnt/β-catenin signaling. Analysis of human cell lines lacking LDB or Pygo supports the functional relevance of the Pygo-LDB1-SSBP2 interaction for Wnt/β-catenin-dependent transcription.
first_indexed 2024-03-13T03:20:05Z
format Article
id doaj.art-632a99f9288f408296f513fbd0ec830f
institution Directory Open Access Journal
issn 2041-1723
language English
last_indexed 2024-03-13T03:20:05Z
publishDate 2023-06-01
publisher Nature Portfolio
record_format Article
series Nature Communications
spelling doaj.art-632a99f9288f408296f513fbd0ec830f2023-06-25T11:21:51ZengNature PortfolioNature Communications2041-17232023-06-0114111210.1038/s41467-023-39439-9Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosomeHongyang Wang0Mariann Bienz1Xiao-Xue Yan2Wenqing Xu3School of Life Science and Technology, ShanghaiTech UniversityMedical Research Council Laboratory of Molecular BiologyNational Laboratory of Biomacromolecules, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of SciencesSchool of Life Science and Technology, ShanghaiTech UniversityAbstract The Wnt enhanceosome is responsible for transactivation of Wnt-responsive genes and a promising therapeutic target for treatment of numerous cancers with Adenomatous Polyposis Coli (APC) or β-catenin mutations. How the Wnt enhanceosome is assembled remains poorly understood. Here we show that B-cell lymphoma 9 protein (BCL9), Pygopus (Pygo), LIM domain-binding protein 1 (LDB1) and single-stranded DNA-binding protein (SSBP) form a stable core complex within the Wnt enhanceosome. Their mutual interactions rely on a highly conserved N-terminal asparagine proline phenylalanine (NPF) motif of Pygo, through which the BCL9-Pygo complex binds to the LDB-SSBP core complex. Our crystal structure of a ternary complex comprising the N-terminus of human Pygo2, LDB1 and SSBP2 reveals a single LDB1-SSBP2 complex binding simultaneously to two Pygo2 molecules via their NPF motifs. These interactions critically depend on the NPF motifs which bind to a deep groove formed between LDB1 and SSBP2, potentially constituting a binding site for drugs blocking Wnt/β-catenin signaling. Analysis of human cell lines lacking LDB or Pygo supports the functional relevance of the Pygo-LDB1-SSBP2 interaction for Wnt/β-catenin-dependent transcription.https://doi.org/10.1038/s41467-023-39439-9
spellingShingle Hongyang Wang
Mariann Bienz
Xiao-Xue Yan
Wenqing Xu
Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosome
Nature Communications
title Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosome
title_full Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosome
title_fullStr Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosome
title_full_unstemmed Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosome
title_short Structural basis of the interaction between BCL9-Pygo and LDB-SSBP complexes in assembling the Wnt enhanceosome
title_sort structural basis of the interaction between bcl9 pygo and ldb ssbp complexes in assembling the wnt enhanceosome
url https://doi.org/10.1038/s41467-023-39439-9
work_keys_str_mv AT hongyangwang structuralbasisoftheinteractionbetweenbcl9pygoandldbssbpcomplexesinassemblingthewntenhanceosome
AT mariannbienz structuralbasisoftheinteractionbetweenbcl9pygoandldbssbpcomplexesinassemblingthewntenhanceosome
AT xiaoxueyan structuralbasisoftheinteractionbetweenbcl9pygoandldbssbpcomplexesinassemblingthewntenhanceosome
AT wenqingxu structuralbasisoftheinteractionbetweenbcl9pygoandldbssbpcomplexesinassemblingthewntenhanceosome