A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes
Summary: The term “terroir” has been widely employed to link differential geographic phenotypes with sensorial signatures of agricultural food products, influenced by agricultural practices, soil type, and climate. Nowadays, the geographical indications labeling has been developed to safeguard the q...
| Main Authors: | , , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2023-01-01
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| Series: | iScience |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2589004222021903 |
| _version_ | 1828057062145261568 |
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| author | Anastasia Boutsika Michail Michailidis Maria Ganopoulou Athanasios Dalakouras Christina Skodra Aliki Xanthopoulou George Stamatakis Martina Samiotaki Georgia Tanou Theodoros Moysiadis Lefteris Angelis Christos Bazakos Athanassios Molassiotis Irini Nianiou-Obeidat Ifigeneia Mellidou Ioannis Ganopoulos |
| author_facet | Anastasia Boutsika Michail Michailidis Maria Ganopoulou Athanasios Dalakouras Christina Skodra Aliki Xanthopoulou George Stamatakis Martina Samiotaki Georgia Tanou Theodoros Moysiadis Lefteris Angelis Christos Bazakos Athanassios Molassiotis Irini Nianiou-Obeidat Ifigeneia Mellidou Ioannis Ganopoulos |
| author_sort | Anastasia Boutsika |
| collection | DOAJ |
| description | Summary: The term “terroir” has been widely employed to link differential geographic phenotypes with sensorial signatures of agricultural food products, influenced by agricultural practices, soil type, and climate. Nowadays, the geographical indications labeling has been developed to safeguard the quality of plant-derived food that is linked to a certain terroir and is generally considered as an indication of superior organoleptic properties. As the dynamics of agroecosystems are highly intricate, consisting of tangled networks of interactions between plants, microorganisms, and the surrounding environment, the recognition of the key molecular components of terroir fingerprinting remains a great challenge to protect both the origin and the safety of food commodities. Furthermore, the contribution of microbiome as a potential driver of the terroir signature has been underestimated. Herein, we present a first comprehensive view of the multi-omic landscape related to transcriptome, proteome, epigenome, and metagenome of the popular Protected Geographical Indication potatoes of Naxos. |
| first_indexed | 2024-04-10T21:06:27Z |
| format | Article |
| id | doaj.art-639d49ee6a3b48c38118587784c7fe17 |
| institution | Directory Open Access Journal |
| issn | 2589-0042 |
| language | English |
| last_indexed | 2024-04-10T21:06:27Z |
| publishDate | 2023-01-01 |
| publisher | Elsevier |
| record_format | Article |
| series | iScience |
| spelling | doaj.art-639d49ee6a3b48c38118587784c7fe172023-01-22T04:41:52ZengElsevieriScience2589-00422023-01-01261105917A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoesAnastasia Boutsika0Michail Michailidis1Maria Ganopoulou2Athanasios Dalakouras3Christina Skodra4Aliki Xanthopoulou5George Stamatakis6Martina Samiotaki7Georgia Tanou8Theodoros Moysiadis9Lefteris Angelis10Christos Bazakos11Athanassios Molassiotis12Irini Nianiou-Obeidat13Ifigeneia Mellidou14Ioannis Ganopoulos15Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, 570001 Thessaloniki-Thermi, Greece; Laboratory of Genetics and Plant Breeding, School of Agriculture, Aristotle University, 54124 Thessaloniki, GreeceJoint Laboratory of Horticulture, ELGO-DIMITRA, 57001 Thessaloniki-Thermi, 21 GreeceSchool of Informatics, Aristotle University of Thessaloniki, 54124 Thessaloniki, GreeceInstitute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, 570001 Thessaloniki-Thermi, GreeceLaboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, 57001 Thessaloniki-Thermi, GreeceInstitute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, 570001 Thessaloniki-Thermi, Greece; Joint Laboratory of Horticulture, ELGO-DIMITRA, 57001 Thessaloniki-Thermi, 21 GreeceInstitute for Bioinnovation, Biomedical Sciences Research Center “Alexander Fleming”, 16672 Vari, GreeceInstitute for Bioinnovation, Biomedical Sciences Research Center “Alexander Fleming”, 16672 Vari, GreeceJoint Laboratory of Horticulture, ELGO-DIMITRA, 57001 Thessaloniki-Thermi, 21 Greece; Institute of Soil and Water Resources, ELGO-DIMITRA, 57001 Thessaloniki-Thermi, GreeceInstitute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, 570001 Thessaloniki-Thermi, Greece; Department of Computer Science, School of Sciences and Engineering, University of Nicosia, 2417 Nicosia, CyprusSchool of Informatics, Aristotle University of Thessaloniki, 54124 Thessaloniki, GreeceInstitute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, 570001 Thessaloniki-Thermi, Greece; Joint Laboratory of Horticulture, ELGO-DIMITRA, 57001 Thessaloniki-Thermi, 21 Greece; Max Planck Institute for Plant Breeding Research, Department of Comparative Development and Genetics, Carl-von-Linné-Weg 10, 50829 Cologne, GermanyLaboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, 57001 Thessaloniki-Thermi, GreeceLaboratory of Genetics and Plant Breeding, School of Agriculture, Aristotle University, 54124 Thessaloniki, GreeceInstitute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, 570001 Thessaloniki-Thermi, Greece; Joint Laboratory of Horticulture, ELGO-DIMITRA, 57001 Thessaloniki-Thermi, 21 Greece; Corresponding authorInstitute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, 570001 Thessaloniki-Thermi, Greece; Joint Laboratory of Horticulture, ELGO-DIMITRA, 57001 Thessaloniki-Thermi, 21 Greece; Corresponding authorSummary: The term “terroir” has been widely employed to link differential geographic phenotypes with sensorial signatures of agricultural food products, influenced by agricultural practices, soil type, and climate. Nowadays, the geographical indications labeling has been developed to safeguard the quality of plant-derived food that is linked to a certain terroir and is generally considered as an indication of superior organoleptic properties. As the dynamics of agroecosystems are highly intricate, consisting of tangled networks of interactions between plants, microorganisms, and the surrounding environment, the recognition of the key molecular components of terroir fingerprinting remains a great challenge to protect both the origin and the safety of food commodities. Furthermore, the contribution of microbiome as a potential driver of the terroir signature has been underestimated. Herein, we present a first comprehensive view of the multi-omic landscape related to transcriptome, proteome, epigenome, and metagenome of the popular Protected Geographical Indication potatoes of Naxos.http://www.sciencedirect.com/science/article/pii/S2589004222021903Plant biogeographyGenomicsAgricultural plant products |
| spellingShingle | Anastasia Boutsika Michail Michailidis Maria Ganopoulou Athanasios Dalakouras Christina Skodra Aliki Xanthopoulou George Stamatakis Martina Samiotaki Georgia Tanou Theodoros Moysiadis Lefteris Angelis Christos Bazakos Athanassios Molassiotis Irini Nianiou-Obeidat Ifigeneia Mellidou Ioannis Ganopoulos A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes iScience Plant biogeography Genomics Agricultural plant products |
| title | A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes |
| title_full | A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes |
| title_fullStr | A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes |
| title_full_unstemmed | A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes |
| title_short | A wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes |
| title_sort | wide foodomics approach coupled with metagenomics elucidates the environmental signature of potatoes |
| topic | Plant biogeography Genomics Agricultural plant products |
| url | http://www.sciencedirect.com/science/article/pii/S2589004222021903 |
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