Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features
<p>Abstract</p> <p>MicroRNAs (small ~22 nucleotide long non-coding endogenous RNAs) have recently attracted immense attention as critical regulators of gene expression in multi-cellular eukaryotes, especially in humans. Recent studies have proved that viruses also express microRNAs...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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BMC
2009-08-01
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| Series: | Virology Journal |
| Online Access: | http://www.virologyj.com/content/6/1/129 |
| _version_ | 1818235753920987136 |
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| author | Scaria Vinod Ansari Faraz A Kumar Shiva |
| author_facet | Scaria Vinod Ansari Faraz A Kumar Shiva |
| author_sort | Scaria Vinod |
| collection | DOAJ |
| description | <p>Abstract</p> <p>MicroRNAs (small ~22 nucleotide long non-coding endogenous RNAs) have recently attracted immense attention as critical regulators of gene expression in multi-cellular eukaryotes, especially in humans. Recent studies have proved that viruses also express microRNAs, which are thought to contribute to the intricate mechanisms of host-pathogen interactions. Computational predictions have greatly accelerated the discovery of microRNAs. However, most of these widely used tools are dependent on structural features and sequence conservation which limits their use in discovering novel virus expressed microRNAs and non-conserved eukaryotic microRNAs. In this work an efficient prediction method is developed based on the hypothesis that sequence and structure features which discriminate between host microRNA precursor hairpins and pseudo microRNAs are shared by viral microRNA as they depend on host machinery for the processing of microRNA precursors. The proposed method has been found to be more efficient than recently reported <it>ab-initio </it>methods for predicting viral microRNAs and microRNAs expressed by mammals.</p> |
| first_indexed | 2024-12-12T11:58:59Z |
| format | Article |
| id | doaj.art-63e6cedc099b4c8db232473182f55fdb |
| institution | Directory Open Access Journal |
| issn | 1743-422X |
| language | English |
| last_indexed | 2024-12-12T11:58:59Z |
| publishDate | 2009-08-01 |
| publisher | BMC |
| record_format | Article |
| series | Virology Journal |
| spelling | doaj.art-63e6cedc099b4c8db232473182f55fdb2022-12-22T00:25:09ZengBMCVirology Journal1743-422X2009-08-016112910.1186/1743-422X-6-129Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural featuresScaria VinodAnsari Faraz AKumar Shiva<p>Abstract</p> <p>MicroRNAs (small ~22 nucleotide long non-coding endogenous RNAs) have recently attracted immense attention as critical regulators of gene expression in multi-cellular eukaryotes, especially in humans. Recent studies have proved that viruses also express microRNAs, which are thought to contribute to the intricate mechanisms of host-pathogen interactions. Computational predictions have greatly accelerated the discovery of microRNAs. However, most of these widely used tools are dependent on structural features and sequence conservation which limits their use in discovering novel virus expressed microRNAs and non-conserved eukaryotic microRNAs. In this work an efficient prediction method is developed based on the hypothesis that sequence and structure features which discriminate between host microRNA precursor hairpins and pseudo microRNAs are shared by viral microRNA as they depend on host machinery for the processing of microRNA precursors. The proposed method has been found to be more efficient than recently reported <it>ab-initio </it>methods for predicting viral microRNAs and microRNAs expressed by mammals.</p>http://www.virologyj.com/content/6/1/129 |
| spellingShingle | Scaria Vinod Ansari Faraz A Kumar Shiva Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features Virology Journal |
| title | Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features |
| title_full | Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features |
| title_fullStr | Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features |
| title_full_unstemmed | Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features |
| title_short | Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features |
| title_sort | prediction of viral microrna precursors based on human microrna precursor sequence and structural features |
| url | http://www.virologyj.com/content/6/1/129 |
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