The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources
Sargentodoxa cuneata is used as traditional Chinese medicine. In this study, we report its complete chloroplast genome by Illumina pair-end sequencing. The total chloroplast (cp) genome size was 158,094 bp in length, containing a pair of inverted repeats of 26,132 bp, separated by large single-copy...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1863870 |
| _version_ | 1797639005639016448 |
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| author | Xuejun Cui Xingong Wang Yanjie Wang Qingjun Yuan Ye Shen Linde Liu |
| author_facet | Xuejun Cui Xingong Wang Yanjie Wang Qingjun Yuan Ye Shen Linde Liu |
| author_sort | Xuejun Cui |
| collection | DOAJ |
| description | Sargentodoxa cuneata is used as traditional Chinese medicine. In this study, we report its complete chloroplast genome by Illumina pair-end sequencing. The total chloroplast (cp) genome size was 158,094 bp in length, containing a pair of inverted repeats of 26,132 bp, separated by large single-copy and small single-copy regions of 86,508 bp and 19,322 bp, respectively. The chloroplast genome of S. cuneata encodes 113 different genes, including 79 protein-coding genes, 30 transfer RNAs, and 4 ribosomal RNAs. A total of 84 perfect chloroplast microsatellites were analyzed in the S. cuneata. The majority of the SSRs in this chloroplast genome are mononucleotides (66.67%). The reconstructed phylogeny revealed that S. cuneata was sister to the remaining Lardizabalaceae. |
| first_indexed | 2024-03-11T13:11:37Z |
| format | Article |
| id | doaj.art-642754ebd9a74efbacf63090f25cf8ba |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:37Z |
| publishDate | 2021-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-642754ebd9a74efbacf63090f25cf8ba2023-11-03T14:08:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-01-016124524610.1080/23802359.2020.18638701863870The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resourcesXuejun Cui0Xingong Wang1Yanjie Wang2Qingjun Yuan3Ye Shen4Linde Liu5School of Life Sciences, Ludong UniversityDepartment of Traditional Chinese medicine, Shandong College of Traditional Chinese MedicineSchool of Life Sciences, Ludong UniversityState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical SciencesState Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical SciencesSchool of Life Sciences, Ludong UniversitySargentodoxa cuneata is used as traditional Chinese medicine. In this study, we report its complete chloroplast genome by Illumina pair-end sequencing. The total chloroplast (cp) genome size was 158,094 bp in length, containing a pair of inverted repeats of 26,132 bp, separated by large single-copy and small single-copy regions of 86,508 bp and 19,322 bp, respectively. The chloroplast genome of S. cuneata encodes 113 different genes, including 79 protein-coding genes, 30 transfer RNAs, and 4 ribosomal RNAs. A total of 84 perfect chloroplast microsatellites were analyzed in the S. cuneata. The majority of the SSRs in this chloroplast genome are mononucleotides (66.67%). The reconstructed phylogeny revealed that S. cuneata was sister to the remaining Lardizabalaceae.http://dx.doi.org/10.1080/23802359.2020.1863870chloroplast genomesargentodoxa cuneatamolecular markersssr |
| spellingShingle | Xuejun Cui Xingong Wang Yanjie Wang Qingjun Yuan Ye Shen Linde Liu The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources Mitochondrial DNA. Part B. Resources chloroplast genome sargentodoxa cuneata molecular markers ssr |
| title | The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources |
| title_full | The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources |
| title_fullStr | The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources |
| title_full_unstemmed | The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources |
| title_short | The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources |
| title_sort | complete chloroplast genome sequence of sargentodoxa cuneata genome structure and genomic resources |
| topic | chloroplast genome sargentodoxa cuneata molecular markers ssr |
| url | http://dx.doi.org/10.1080/23802359.2020.1863870 |
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