The sequencing and characterization of chloroplast genome of Geranium sibiricum Linne
The complete chloroplast genome of Geranium sibiricum Linne. was sequenced, assembled and annotated. It is a circular form of 150,656 bp in length, which was separated into four distinct regions, a large single copy (LSC) of 73,862 bp, a small single copy region (SSC) of 52,666 bp, two inverted repe...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-08-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1947912 |
| _version_ | 1827772373217050624 |
|---|---|
| author | Sun Huizhen Xinyuan Xue |
| author_facet | Sun Huizhen Xinyuan Xue |
| author_sort | Sun Huizhen |
| collection | DOAJ |
| description | The complete chloroplast genome of Geranium sibiricum Linne. was sequenced, assembled and annotated. It is a circular form of 150,656 bp in length, which was separated into four distinct regions, a large single copy (LSC) of 73,862 bp, a small single copy region (SSC) of 52,666 bp, two inverted repeats (IR) of 12,064bp. A total of 124 genes were predicted, of which, 87 encode proteins, 4 rRNA, 33 tRNA. The evolutionary history was inferred using Maximum Likelihood method, and the result indicates that G. sibiricum was grouped within Geraniaceae, and comprised a clade with Geranium palmatum under 100% Bootstrap value. |
| first_indexed | 2024-03-11T13:08:35Z |
| format | Article |
| id | doaj.art-64ca8605bcb54f1294140b2f01988eba |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:35Z |
| publishDate | 2021-08-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-64ca8605bcb54f1294140b2f01988eba2023-11-03T14:28:28ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-08-01682254225510.1080/23802359.2021.19479121947912The sequencing and characterization of chloroplast genome of Geranium sibiricum LinneSun Huizhen0Xinyuan Xue1Center for Ecological Research, Northeast Forestry UniversityCenter for Ecological Research, Northeast Forestry UniversityThe complete chloroplast genome of Geranium sibiricum Linne. was sequenced, assembled and annotated. It is a circular form of 150,656 bp in length, which was separated into four distinct regions, a large single copy (LSC) of 73,862 bp, a small single copy region (SSC) of 52,666 bp, two inverted repeats (IR) of 12,064bp. A total of 124 genes were predicted, of which, 87 encode proteins, 4 rRNA, 33 tRNA. The evolutionary history was inferred using Maximum Likelihood method, and the result indicates that G. sibiricum was grouped within Geraniaceae, and comprised a clade with Geranium palmatum under 100% Bootstrap value.http://dx.doi.org/10.1080/23802359.2021.1947912geranium sibiricumchloroplast genomephylogenetic analysis |
| spellingShingle | Sun Huizhen Xinyuan Xue The sequencing and characterization of chloroplast genome of Geranium sibiricum Linne Mitochondrial DNA. Part B. Resources geranium sibiricum chloroplast genome phylogenetic analysis |
| title | The sequencing and characterization of chloroplast genome of Geranium sibiricum Linne |
| title_full | The sequencing and characterization of chloroplast genome of Geranium sibiricum Linne |
| title_fullStr | The sequencing and characterization of chloroplast genome of Geranium sibiricum Linne |
| title_full_unstemmed | The sequencing and characterization of chloroplast genome of Geranium sibiricum Linne |
| title_short | The sequencing and characterization of chloroplast genome of Geranium sibiricum Linne |
| title_sort | sequencing and characterization of chloroplast genome of geranium sibiricum linne |
| topic | geranium sibiricum chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1947912 |
| work_keys_str_mv | AT sunhuizhen thesequencingandcharacterizationofchloroplastgenomeofgeraniumsibiricumlinne AT xinyuanxue thesequencingandcharacterizationofchloroplastgenomeofgeraniumsibiricumlinne AT sunhuizhen sequencingandcharacterizationofchloroplastgenomeofgeraniumsibiricumlinne AT xinyuanxue sequencingandcharacterizationofchloroplastgenomeofgeraniumsibiricumlinne |