A Novel QTL for Resistance to Phytophthora Crown Rot in Squash
<i>Phytophthora capsici</i> Leonian causes significant yield losses in commercial squash (<i>Cucurbita pepo</i>) production worldwide. The deployment of resistant cultivars can complement integrated management practices for <i>P. capsici</i>, but resistant cultiva...
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| Format: | Article |
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MDPI AG
2021-10-01
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| Series: | Plants |
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| Online Access: | https://www.mdpi.com/2223-7747/10/10/2115 |
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| author | Vincent Njung’e Michael Yuqing Fu Swati Shrestha Geoffrey Meru |
| author_facet | Vincent Njung’e Michael Yuqing Fu Swati Shrestha Geoffrey Meru |
| author_sort | Vincent Njung’e Michael |
| collection | DOAJ |
| description | <i>Phytophthora capsici</i> Leonian causes significant yield losses in commercial squash (<i>Cucurbita pepo</i>) production worldwide. The deployment of resistant cultivars can complement integrated management practices for <i>P. capsici</i>, but resistant cultivars are currently unavailable for growers. Moderate resistance to Phytophthora crown rot in a selection of accession PI 181761 (<i>C. pepo</i>) (designated line #181761-36P) is controlled by three dominant genes (R4, R5 and R6). Introgression of these loci into elite germplasm through marker-assisted selection (MAS) can accelerate the release of new <i>C. pepo</i> cultivars resistant to crown rot, but these tools are currently unavailable. Here we describe the identification of a quantitative trait locus (QTL), molecular markers and candidate genes associated with crown rot resistance in #181761-36P. Five hundred and twenty-three SNP markers were genotyped in an F<sub>2</sub> (<i>n</i> = 83) population derived from a cross between #181761-36P (R) and Table Queen (S) using targeted genotyping by sequencing. A linkage map (2068.96 cM) consisting of twenty-one linkage groups and an average density of 8.1 markers/cM was developed for the F<sub>2</sub> population. The F<sub>2</sub>:<sub>3</sub> families were phenotyped in the greenhouse with a virulent strain of <i>P. capsica</i>, using the spore-spray method. A single QTL (<i>QtlPC-C13</i>) was consistently detected on LG 13 (chromosome 13) across three experiments and explained 17.92–21.47% of phenotypic variation observed in the population. Nine candidate disease resistance gene homologs were found within the confidence interval of <i>QtlPC-C13</i>. Single nucleotide polymorphism (SNP) markers within these genes were converted into Kompetitive Allele Specific PCR (KASP) assays and tested for association with resistance in the F<sub>2</sub> population. One SNP marker (C002686) was significantly associated with resistance to crown rot in the F<sub>2</sub> population (<i>p</i> < 0.05). This marker is a potential target for MAS for crown rot resistance in <i>C. pepo</i>. |
| first_indexed | 2024-03-10T06:15:16Z |
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| id | doaj.art-6503eb8c72514c3ea574bb5dff4c5f59 |
| institution | Directory Open Access Journal |
| issn | 2223-7747 |
| language | English |
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| spelling | doaj.art-6503eb8c72514c3ea574bb5dff4c5f592023-11-22T19:44:01ZengMDPI AGPlants2223-77472021-10-011010211510.3390/plants10102115A Novel QTL for Resistance to Phytophthora Crown Rot in SquashVincent Njung’e Michael0Yuqing Fu1Swati Shrestha2Geoffrey Meru3The Tropical Research and Education Center, Horticultural Sciences Department, University of Florida, 18905 SW 280 ST Homestead, Gainesville, FL 33031, USAThe Tropical Research and Education Center, Horticultural Sciences Department, University of Florida, 18905 SW 280 ST Homestead, Gainesville, FL 33031, USAThe Tropical Research and Education Center, Horticultural Sciences Department, University of Florida, 18905 SW 280 ST Homestead, Gainesville, FL 33031, USAThe Tropical Research and Education Center, Horticultural Sciences Department, University of Florida, 18905 SW 280 ST Homestead, Gainesville, FL 33031, USA<i>Phytophthora capsici</i> Leonian causes significant yield losses in commercial squash (<i>Cucurbita pepo</i>) production worldwide. The deployment of resistant cultivars can complement integrated management practices for <i>P. capsici</i>, but resistant cultivars are currently unavailable for growers. Moderate resistance to Phytophthora crown rot in a selection of accession PI 181761 (<i>C. pepo</i>) (designated line #181761-36P) is controlled by three dominant genes (R4, R5 and R6). Introgression of these loci into elite germplasm through marker-assisted selection (MAS) can accelerate the release of new <i>C. pepo</i> cultivars resistant to crown rot, but these tools are currently unavailable. Here we describe the identification of a quantitative trait locus (QTL), molecular markers and candidate genes associated with crown rot resistance in #181761-36P. Five hundred and twenty-three SNP markers were genotyped in an F<sub>2</sub> (<i>n</i> = 83) population derived from a cross between #181761-36P (R) and Table Queen (S) using targeted genotyping by sequencing. A linkage map (2068.96 cM) consisting of twenty-one linkage groups and an average density of 8.1 markers/cM was developed for the F<sub>2</sub> population. The F<sub>2</sub>:<sub>3</sub> families were phenotyped in the greenhouse with a virulent strain of <i>P. capsica</i>, using the spore-spray method. A single QTL (<i>QtlPC-C13</i>) was consistently detected on LG 13 (chromosome 13) across three experiments and explained 17.92–21.47% of phenotypic variation observed in the population. Nine candidate disease resistance gene homologs were found within the confidence interval of <i>QtlPC-C13</i>. Single nucleotide polymorphism (SNP) markers within these genes were converted into Kompetitive Allele Specific PCR (KASP) assays and tested for association with resistance in the F<sub>2</sub> population. One SNP marker (C002686) was significantly associated with resistance to crown rot in the F<sub>2</sub> population (<i>p</i> < 0.05). This marker is a potential target for MAS for crown rot resistance in <i>C. pepo</i>.https://www.mdpi.com/2223-7747/10/10/2115QTL mapping<i>Cucurbita pepo</i>breedingdisease resistance<i>Phytophthora capsici</i>marker-assisted selection |
| spellingShingle | Vincent Njung’e Michael Yuqing Fu Swati Shrestha Geoffrey Meru A Novel QTL for Resistance to Phytophthora Crown Rot in Squash Plants QTL mapping <i>Cucurbita pepo</i> breeding disease resistance <i>Phytophthora capsici</i> marker-assisted selection |
| title | A Novel QTL for Resistance to Phytophthora Crown Rot in Squash |
| title_full | A Novel QTL for Resistance to Phytophthora Crown Rot in Squash |
| title_fullStr | A Novel QTL for Resistance to Phytophthora Crown Rot in Squash |
| title_full_unstemmed | A Novel QTL for Resistance to Phytophthora Crown Rot in Squash |
| title_short | A Novel QTL for Resistance to Phytophthora Crown Rot in Squash |
| title_sort | novel qtl for resistance to phytophthora crown rot in squash |
| topic | QTL mapping <i>Cucurbita pepo</i> breeding disease resistance <i>Phytophthora capsici</i> marker-assisted selection |
| url | https://www.mdpi.com/2223-7747/10/10/2115 |
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