The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton
Lack of precise information about the candidate genes involved in a complex quantitative trait is a major obstacle in the cotton fiber quality improvement, and thus, overall genetic gain in conventional phenotypic selection is low. Recent molecular interventions and advancements in genome sequencing...
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| Format: | Article |
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Frontiers Media S.A.
2022-03-01
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| Series: | Frontiers in Genetics |
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| Online Access: | https://www.frontiersin.org/articles/10.3389/fgene.2021.642595/full |
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| author | Abdul Razzaq Abdul Razzaq Abdul Razzaq Muhammad Mubashar Zafar Muhammad Mubashar Zafar Arfan Ali Abdul Hafeez Abdul Hafeez Faiza Sharif Xueing Guan Xiaoying Deng Xiaoying Deng Li Pengtao Yuzhen Shi Yuzhen Shi Muhammad Haroon Wankui Gong Wankui Gong Maozhi Ren Maozhi Ren Maozhi Ren Youlu Yuan Youlu Yuan |
| author_facet | Abdul Razzaq Abdul Razzaq Abdul Razzaq Muhammad Mubashar Zafar Muhammad Mubashar Zafar Arfan Ali Abdul Hafeez Abdul Hafeez Faiza Sharif Xueing Guan Xiaoying Deng Xiaoying Deng Li Pengtao Yuzhen Shi Yuzhen Shi Muhammad Haroon Wankui Gong Wankui Gong Maozhi Ren Maozhi Ren Maozhi Ren Youlu Yuan Youlu Yuan |
| author_sort | Abdul Razzaq |
| collection | DOAJ |
| description | Lack of precise information about the candidate genes involved in a complex quantitative trait is a major obstacle in the cotton fiber quality improvement, and thus, overall genetic gain in conventional phenotypic selection is low. Recent molecular interventions and advancements in genome sequencing have led to the development of high-throughput molecular markers, quantitative trait locus (QTL) fine mapping, and single nucleotide polymorphisms (SNPs). These advanced tools have resolved the existing bottlenecks in trait-specific breeding. This review demonstrates the significance of chromosomes 3, 7, 9, 11, and 12 of sub-genomes A and D carrying candidate genes for fiber quality. However, chromosome 7 carrying SNPs for stable and potent QTLs related to fiber quality provides great insights for fiber quality-targeted research. This information can be validated by marker-assisted selection (MAS) and transgene in Arabidopsis and subsequently in cotton. |
| first_indexed | 2024-04-12T22:22:53Z |
| format | Article |
| id | doaj.art-657061b488e14deca220da3db0973d67 |
| institution | Directory Open Access Journal |
| issn | 1664-8021 |
| language | English |
| last_indexed | 2024-04-12T22:22:53Z |
| publishDate | 2022-03-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Genetics |
| spelling | doaj.art-657061b488e14deca220da3db0973d672022-12-22T03:14:17ZengFrontiers Media S.A.Frontiers in Genetics1664-80212022-03-011210.3389/fgene.2021.642595642595The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of CottonAbdul Razzaq0Abdul Razzaq1Abdul Razzaq2Muhammad Mubashar Zafar3Muhammad Mubashar Zafar4Arfan Ali5Abdul Hafeez6Abdul Hafeez7Faiza Sharif8Xueing Guan9Xiaoying Deng10Xiaoying Deng11Li Pengtao12Yuzhen Shi13Yuzhen Shi14Muhammad Haroon15Wankui Gong16Wankui Gong17Maozhi Ren18Maozhi Ren19Maozhi Ren20Youlu Yuan21Youlu Yuan22State Key Laboratory of Cotton Biology, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaInstitute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, PakistanState Key Laboratory of Cotton Biology, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaFB Genetics Four Brothers Group, Lahore, PakistanState Key Laboratory of Cotton Biology, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaUniversity Institute of Physical Therapy, The University of Lahore, Lahore, PakistanZhejiang University, Hangzhou, ChinaState Key Laboratory of Cotton Biology, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaSchool of Biotechnology and Food Engineering, Anyang Institute of Technology, Anyang, ChinaState Key Laboratory of Cotton Biology, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, ChinaState Key Laboratory of Cotton Biology, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaState Key Laboratory of Cotton Biology, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaZhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, ChinaKey Laboratory of Biological and Genetic Breeding of Cotton, The Ministry of Agriculture, Institute of Cotton Research, Chinese Academy of Agricultural Science, Anyang, ChinaZhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, ChinaLack of precise information about the candidate genes involved in a complex quantitative trait is a major obstacle in the cotton fiber quality improvement, and thus, overall genetic gain in conventional phenotypic selection is low. Recent molecular interventions and advancements in genome sequencing have led to the development of high-throughput molecular markers, quantitative trait locus (QTL) fine mapping, and single nucleotide polymorphisms (SNPs). These advanced tools have resolved the existing bottlenecks in trait-specific breeding. This review demonstrates the significance of chromosomes 3, 7, 9, 11, and 12 of sub-genomes A and D carrying candidate genes for fiber quality. However, chromosome 7 carrying SNPs for stable and potent QTLs related to fiber quality provides great insights for fiber quality-targeted research. This information can be validated by marker-assisted selection (MAS) and transgene in Arabidopsis and subsequently in cotton.https://www.frontiersin.org/articles/10.3389/fgene.2021.642595/fullfiber qualitycotton fiber developmentchromosome 7 significanceGossypium speciesstable QTLsSNPs |
| spellingShingle | Abdul Razzaq Abdul Razzaq Abdul Razzaq Muhammad Mubashar Zafar Muhammad Mubashar Zafar Arfan Ali Abdul Hafeez Abdul Hafeez Faiza Sharif Xueing Guan Xiaoying Deng Xiaoying Deng Li Pengtao Yuzhen Shi Yuzhen Shi Muhammad Haroon Wankui Gong Wankui Gong Maozhi Ren Maozhi Ren Maozhi Ren Youlu Yuan Youlu Yuan The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton Frontiers in Genetics fiber quality cotton fiber development chromosome 7 significance Gossypium species stable QTLs SNPs |
| title | The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton |
| title_full | The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton |
| title_fullStr | The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton |
| title_full_unstemmed | The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton |
| title_short | The Pivotal Role of Major Chromosomes of Sub-Genomes A and D in Fiber Quality Traits of Cotton |
| title_sort | pivotal role of major chromosomes of sub genomes a and d in fiber quality traits of cotton |
| topic | fiber quality cotton fiber development chromosome 7 significance Gossypium species stable QTLs SNPs |
| url | https://www.frontiersin.org/articles/10.3389/fgene.2021.642595/full |
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