Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae)
Amsonia elliptica (Apocynaceae), endangered species in Korea, is a perennial herb that is economically important as traditional medicine and used as ornamentals. Natural populations of this species are facing extinction due to small population size and isolated distribution. Here, we report the comp...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2192834 |
| _version_ | 1797638503730774016 |
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| author | Yongsung Kim Bo-Mi Nam Iseon Kim Tao Deng Changkyun Kim |
| author_facet | Yongsung Kim Bo-Mi Nam Iseon Kim Tao Deng Changkyun Kim |
| author_sort | Yongsung Kim |
| collection | DOAJ |
| description | Amsonia elliptica (Apocynaceae), endangered species in Korea, is a perennial herb that is economically important as traditional medicine and used as ornamentals. Natural populations of this species are facing extinction due to small population size and isolated distribution. Here, we report the complete chloroplast (cp) genome of A. elliptica using Illumina HiSeq sequencing and its phylogenetic position in subfamily Rauvolfioideae based on 20 Apocynaceae cp genomes. The cp genome of A. elliptica was 154,242 bp in length with a pair of inverted repeats of 25,711 bp, separated by large single-copy and small single-copy regions of 85,382 bp and 17,438 bp, respectively. Our phylogenomic analyses revealed that A. elliptica was closely related to Rhazya stricta in Rauvolfioideae (Apocynaceae). |
| first_indexed | 2024-03-11T13:04:05Z |
| format | Article |
| id | doaj.art-668842d48820478f969d4fcf3568bac6 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:04:05Z |
| publishDate | 2023-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-668842d48820478f969d4fcf3568bac62023-11-03T14:44:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-03-018346146510.1080/23802359.2023.21928342192834Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae)Yongsung Kim0Bo-Mi Nam1Iseon Kim2Tao Deng3Changkyun Kim4Division of Botany, Honam National Institute of Biological ResourcesDivision of Botany, Honam National Institute of Biological ResourcesDivision of Botany, Honam National Institute of Biological ResourcesCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of SciencesDivision of Botany, Honam National Institute of Biological ResourcesAmsonia elliptica (Apocynaceae), endangered species in Korea, is a perennial herb that is economically important as traditional medicine and used as ornamentals. Natural populations of this species are facing extinction due to small population size and isolated distribution. Here, we report the complete chloroplast (cp) genome of A. elliptica using Illumina HiSeq sequencing and its phylogenetic position in subfamily Rauvolfioideae based on 20 Apocynaceae cp genomes. The cp genome of A. elliptica was 154,242 bp in length with a pair of inverted repeats of 25,711 bp, separated by large single-copy and small single-copy regions of 85,382 bp and 17,438 bp, respectively. Our phylogenomic analyses revealed that A. elliptica was closely related to Rhazya stricta in Rauvolfioideae (Apocynaceae).http://dx.doi.org/10.1080/23802359.2023.2192834amsonia ellipticaapocynaceaechloroplast genomeendangered speciesphylogenomic analyses |
| spellingShingle | Yongsung Kim Bo-Mi Nam Iseon Kim Tao Deng Changkyun Kim Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae) Mitochondrial DNA. Part B. Resources amsonia elliptica apocynaceae chloroplast genome endangered species phylogenomic analyses |
| title | Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae) |
| title_full | Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae) |
| title_fullStr | Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae) |
| title_short | Characterization of the complete chloroplast genome of Amsonia elliptica (Apocynaceae) |
| title_sort | characterization of the complete chloroplast genome of amsonia elliptica apocynaceae |
| topic | amsonia elliptica apocynaceae chloroplast genome endangered species phylogenomic analyses |
| url | http://dx.doi.org/10.1080/23802359.2023.2192834 |
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