Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca)
Auxin signaling plays a significant role in the whole process of plant growth and development from embryogenesis to senescence. Auxin response factors (ARFs) are reported to regulate the expression of auxin response genes by binding to auxin response elements. ARF is the most critical transcription...
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| Format: | Article |
| Language: | English |
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Elsevier
2019-07-01
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| Series: | Journal of Integrative Agriculture |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2095311919625566 |
| _version_ | 1818642671401435136 |
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| author | Shao-xi WANG Feng-yan SHI Xiang-xiang DONG Yu-xiang LI Zhi-hong ZHANG He LI |
| author_facet | Shao-xi WANG Feng-yan SHI Xiang-xiang DONG Yu-xiang LI Zhi-hong ZHANG He LI |
| author_sort | Shao-xi WANG |
| collection | DOAJ |
| description | Auxin signaling plays a significant role in the whole process of plant growth and development from embryogenesis to senescence. Auxin response factors (ARFs) are reported to regulate the expression of auxin response genes by binding to auxin response elements. ARF is the most critical transcription factor family which has been released in most species, but few reports in strawberry. In this study, the structure characterization of 12 FvARF genes in strawberry, their expression patterns at different development stages, different organizations, and different indole-3-acetic acid (IAA) treatments were analyzed. The expression of 12 FvARFs was found in all experiment tissues and showed almost the same trend during fruit development. All FvARFs respond to the treatment of IAA. Our study provides comprehensive information on ARF family in strawberry, including gene structures, chromosome locations, phylogenetic relationships and expression patterns. The information on FvARF genes paves the way for future research on strawberry ARF genes. |
| first_indexed | 2024-12-16T23:46:46Z |
| format | Article |
| id | doaj.art-6696ffecaff84836b18b611a3563442f |
| institution | Directory Open Access Journal |
| issn | 2095-3119 |
| language | English |
| last_indexed | 2024-12-16T23:46:46Z |
| publishDate | 2019-07-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Journal of Integrative Agriculture |
| spelling | doaj.art-6696ffecaff84836b18b611a3563442f2022-12-21T22:11:28ZengElsevierJournal of Integrative Agriculture2095-31192019-07-0118715871603Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca)Shao-xi WANG0Feng-yan SHI1Xiang-xiang DONG2Yu-xiang LI3Zhi-hong ZHANG4He LI5College of Horticulture, Shenyang Agricultural University/Liaoning Key Laboratory of Strawberry Breeding and Cultivation, Shenyang 110866, P.R.ChinaCollege of Horticulture, Shenyang Agricultural University/Liaoning Key Laboratory of Strawberry Breeding and Cultivation, Shenyang 110866, P.R.ChinaCollege of Horticulture, Shenyang Agricultural University/Liaoning Key Laboratory of Strawberry Breeding and Cultivation, Shenyang 110866, P.R.ChinaCollege of Horticulture, Shenyang Agricultural University/Liaoning Key Laboratory of Strawberry Breeding and Cultivation, Shenyang 110866, P.R.ChinaCollege of Horticulture, Shenyang Agricultural University/Liaoning Key Laboratory of Strawberry Breeding and Cultivation, Shenyang 110866, P.R.ChinaCorrespondence LI He, Tel: +86-24-88487143; College of Horticulture, Shenyang Agricultural University/Liaoning Key Laboratory of Strawberry Breeding and Cultivation, Shenyang 110866, P.R.ChinaAuxin signaling plays a significant role in the whole process of plant growth and development from embryogenesis to senescence. Auxin response factors (ARFs) are reported to regulate the expression of auxin response genes by binding to auxin response elements. ARF is the most critical transcription factor family which has been released in most species, but few reports in strawberry. In this study, the structure characterization of 12 FvARF genes in strawberry, their expression patterns at different development stages, different organizations, and different indole-3-acetic acid (IAA) treatments were analyzed. The expression of 12 FvARFs was found in all experiment tissues and showed almost the same trend during fruit development. All FvARFs respond to the treatment of IAA. Our study provides comprehensive information on ARF family in strawberry, including gene structures, chromosome locations, phylogenetic relationships and expression patterns. The information on FvARF genes paves the way for future research on strawberry ARF genes.http://www.sciencedirect.com/science/article/pii/S2095311919625566auxinauxin response factorFragaria vescagene structuregene expression |
| spellingShingle | Shao-xi WANG Feng-yan SHI Xiang-xiang DONG Yu-xiang LI Zhi-hong ZHANG He LI Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca) Journal of Integrative Agriculture auxin auxin response factor Fragaria vesca gene structure gene expression |
| title | Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca) |
| title_full | Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca) |
| title_fullStr | Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca) |
| title_full_unstemmed | Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca) |
| title_short | Genome-wide identification and expression analysis of auxin response factor (ARF) gene family in strawberry (Fragaria vesca) |
| title_sort | genome wide identification and expression analysis of auxin response factor arf gene family in strawberry fragaria vesca |
| topic | auxin auxin response factor Fragaria vesca gene structure gene expression |
| url | http://www.sciencedirect.com/science/article/pii/S2095311919625566 |
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