HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6]
Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like seq...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
F1000 Research Ltd
2014-02-01
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| Series: | F1000Research |
| Subjects: | |
| Online Access: | http://f1000research.com/articles/3-48/v1 |
| _version_ | 1818760416653737984 |
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| author | Guy Yachdav Maximilian Hecht Metsada Pasmanik-Chor Adva Yeheskel Burkhard Rost |
| author_facet | Guy Yachdav Maximilian Hecht Metsada Pasmanik-Chor Adva Yeheskel Burkhard Rost |
| author_sort | Guy Yachdav |
| collection | DOAJ |
| description | Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like sequence variants. It can be easily integrated into documents and provides a powerful, interactive way to visualize heat maps in web applications. The software uses a scalable graphics technology that adapts the visualization component to any required resolution, a useful feature for a presentation with many different data-points. The component can be applied to present various biological data types. Here, we present two such cases – showing gene expression data and visualizing mutability landscape analysis. Availability: https://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7706. |
| first_indexed | 2024-12-18T06:58:17Z |
| format | Article |
| id | doaj.art-6705145c04734c9fae3399cccf6f444b |
| institution | Directory Open Access Journal |
| issn | 2046-1402 |
| language | English |
| last_indexed | 2024-12-18T06:58:17Z |
| publishDate | 2014-02-01 |
| publisher | F1000 Research Ltd |
| record_format | Article |
| series | F1000Research |
| spelling | doaj.art-6705145c04734c9fae3399cccf6f444b2022-12-21T21:17:07ZengF1000 Research LtdF1000Research2046-14022014-02-01310.12688/f1000research.3-48.v13678HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6]Guy Yachdav0Maximilian Hecht1Metsada Pasmanik-Chor2Adva Yeheskel3Burkhard Rost4Biosof LLC, New York, NY, 10001, USATUM Graduate School of Information Science in Health (GSISH), 85748 Garching/Munich, GermanyBioinformatics Unit, G.S.W. Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, IsraelBioinformatics Unit, G.S.W. Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, IsraelBiosof LLC, New York, NY, 10001, USASummary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like sequence variants. It can be easily integrated into documents and provides a powerful, interactive way to visualize heat maps in web applications. The software uses a scalable graphics technology that adapts the visualization component to any required resolution, a useful feature for a presentation with many different data-points. The component can be applied to present various biological data types. Here, we present two such cases – showing gene expression data and visualizing mutability landscape analysis. Availability: https://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7706.http://f1000research.com/articles/3-48/v1Bioinformatics |
| spellingShingle | Guy Yachdav Maximilian Hecht Metsada Pasmanik-Chor Adva Yeheskel Burkhard Rost HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6] F1000Research Bioinformatics |
| title | HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6] |
| title_full | HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6] |
| title_fullStr | HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6] |
| title_full_unstemmed | HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6] |
| title_short | HeatMapViewer: interactive display of 2D data in biology [v1; ref status: indexed, http://f1000r.es/2u6] |
| title_sort | heatmapviewer interactive display of 2d data in biology v1 ref status indexed http f1000r es 2u6 |
| topic | Bioinformatics |
| url | http://f1000research.com/articles/3-48/v1 |
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