Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic Acids

This paper considers the evaluation of uncertainty of quantitative gel electrophoresis. To date, such uncertainty estimation presented in the literature are based on the multiple measurements performed for assessing the intra- and interlaboratory reproducibility using standard samples. This paper sh...

Cijeli opis

Bibliografski detalji
Glavni autori: Konstantin Semenov, Aleksandr Taraskin, Alexandra Yurchenko, Irina Baranovskaya, Lada Purvinsh, Natalia Gyulikhandanova, Andrey Vasin
Format: Članak
Jezik:English
Izdano: MDPI AG 2023-02-01
Serija:Sensors
Teme:
Online pristup:https://www.mdpi.com/1424-8220/23/4/1999
_version_ 1827755542361145344
author Konstantin Semenov
Aleksandr Taraskin
Alexandra Yurchenko
Irina Baranovskaya
Lada Purvinsh
Natalia Gyulikhandanova
Andrey Vasin
author_facet Konstantin Semenov
Aleksandr Taraskin
Alexandra Yurchenko
Irina Baranovskaya
Lada Purvinsh
Natalia Gyulikhandanova
Andrey Vasin
author_sort Konstantin Semenov
collection DOAJ
description This paper considers the evaluation of uncertainty of quantitative gel electrophoresis. To date, such uncertainty estimation presented in the literature are based on the multiple measurements performed for assessing the intra- and interlaboratory reproducibility using standard samples. This paper shows how to estimate the uncertainty in cases where we cannot study scattering components of the results. The first point is dedicated to a case where we have standard samples (the direct expressions are shown). The second point considers the situation when standard samples are absent (the algorithm for estimating the lower bound for uncertainty is discussed). The role of the data processing algorithm is demonstrated.
first_indexed 2024-03-11T08:10:49Z
format Article
id doaj.art-67571959df1a4602b486f48c0fcce328
institution Directory Open Access Journal
issn 1424-8220
language English
last_indexed 2024-03-11T08:10:49Z
publishDate 2023-02-01
publisher MDPI AG
record_format Article
series Sensors
spelling doaj.art-67571959df1a4602b486f48c0fcce3282023-11-16T23:08:57ZengMDPI AGSensors1424-82202023-02-01234199910.3390/s23041999Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic AcidsKonstantin Semenov0Aleksandr Taraskin1Alexandra Yurchenko2Irina Baranovskaya3Lada Purvinsh4Natalia Gyulikhandanova5Andrey Vasin6Peter the Great St. Petersburg Polytechnic University, 29, Polytechnicheskaya Str., 195251 St. Petersburg, RussiaPeter the Great St. Petersburg Polytechnic University, 29, Polytechnicheskaya Str., 195251 St. Petersburg, RussiaPeter the Great St. Petersburg Polytechnic University, 29, Polytechnicheskaya Str., 195251 St. Petersburg, RussiaAugusta University, 1120 15th Str., Augusta, GA 30912, USAThe University of Chicago, 947 E. 58th Str., Chicago, IL 60637, USAPeter the Great St. Petersburg Polytechnic University, 29, Polytechnicheskaya Str., 195251 St. Petersburg, RussiaPeter the Great St. Petersburg Polytechnic University, 29, Polytechnicheskaya Str., 195251 St. Petersburg, RussiaThis paper considers the evaluation of uncertainty of quantitative gel electrophoresis. To date, such uncertainty estimation presented in the literature are based on the multiple measurements performed for assessing the intra- and interlaboratory reproducibility using standard samples. This paper shows how to estimate the uncertainty in cases where we cannot study scattering components of the results. The first point is dedicated to a case where we have standard samples (the direct expressions are shown). The second point considers the situation when standard samples are absent (the algorithm for estimating the lower bound for uncertainty is discussed). The role of the data processing algorithm is demonstrated.https://www.mdpi.com/1424-8220/23/4/1999quantitative gel electrophoresiselectrophoretic separationnucleic acidsmetrological analysisuncertainty propagationinaccurate data processing
spellingShingle Konstantin Semenov
Aleksandr Taraskin
Alexandra Yurchenko
Irina Baranovskaya
Lada Purvinsh
Natalia Gyulikhandanova
Andrey Vasin
Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic Acids
Sensors
quantitative gel electrophoresis
electrophoretic separation
nucleic acids
metrological analysis
uncertainty propagation
inaccurate data processing
title Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic Acids
title_full Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic Acids
title_fullStr Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic Acids
title_full_unstemmed Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic Acids
title_short Uncertainty Estimation for Quantitative Agarose Gel Electrophoresis of Nucleic Acids
title_sort uncertainty estimation for quantitative agarose gel electrophoresis of nucleic acids
topic quantitative gel electrophoresis
electrophoretic separation
nucleic acids
metrological analysis
uncertainty propagation
inaccurate data processing
url https://www.mdpi.com/1424-8220/23/4/1999
work_keys_str_mv AT konstantinsemenov uncertaintyestimationforquantitativeagarosegelelectrophoresisofnucleicacids
AT aleksandrtaraskin uncertaintyestimationforquantitativeagarosegelelectrophoresisofnucleicacids
AT alexandrayurchenko uncertaintyestimationforquantitativeagarosegelelectrophoresisofnucleicacids
AT irinabaranovskaya uncertaintyestimationforquantitativeagarosegelelectrophoresisofnucleicacids
AT ladapurvinsh uncertaintyestimationforquantitativeagarosegelelectrophoresisofnucleicacids
AT nataliagyulikhandanova uncertaintyestimationforquantitativeagarosegelelectrophoresisofnucleicacids
AT andreyvasin uncertaintyestimationforquantitativeagarosegelelectrophoresisofnucleicacids