The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L.
Apocynum venetum L. (Apocynaceae) is valuable for its medicinal compounds and fiber content. Native A. venetum populations are threatened and require protection. Wild A. venetum resources are limited relative to market demand and a poor understanding of the composition of A. venetum at the molecular...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2022-01-01
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| Series: | PLoS ONE |
| Online Access: | https://doi.org/10.1371/journal.pone.0261710 |
| _version_ | 1818480053569191936 |
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| author | Xiaonong Guo Zhuanxia Wang Deyu Cai Lei Song Jialin Bai |
| author_facet | Xiaonong Guo Zhuanxia Wang Deyu Cai Lei Song Jialin Bai |
| author_sort | Xiaonong Guo |
| collection | DOAJ |
| description | Apocynum venetum L. (Apocynaceae) is valuable for its medicinal compounds and fiber content. Native A. venetum populations are threatened and require protection. Wild A. venetum resources are limited relative to market demand and a poor understanding of the composition of A. venetum at the molecular level. The chloroplast genome contains genetic markers for phylogenetic analysis, genetic diversity evaluation, and molecular identification. In this study, the entire genome of the A. venetum chloroplast was sequenced and analyzed. The A. venetum cp genome is 150,878 bp, with a pair of inverted repeat regions (IRA and IRB). Each inverted repeat region is 25,810 bp, which consist of large (LSC, 81,951 bp) and small (SSC, 17,307 bp) single copy areas. The genome-wide GC content was 38.35%, LSC made up 36.49%, SSC made up 32.41%, and IR made up 43.3%. The A. venetum chloroplast genome encodes 131 genes, including 86 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. This study identified the unique characteristics of the A. venetum chloroplast genome, which will help formulate effective conservation and management strategies as well as molecular identification approaches for this important medicinal plant. |
| first_indexed | 2024-12-10T11:18:00Z |
| format | Article |
| id | doaj.art-679fc05c7ffc41c8a997bb8efaf73f23 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-10T11:18:00Z |
| publishDate | 2022-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-679fc05c7ffc41c8a997bb8efaf73f232022-12-22T01:51:05ZengPublic Library of Science (PLoS)PLoS ONE1932-62032022-01-01173e026171010.1371/journal.pone.0261710The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L.Xiaonong GuoZhuanxia WangDeyu CaiLei SongJialin BaiApocynum venetum L. (Apocynaceae) is valuable for its medicinal compounds and fiber content. Native A. venetum populations are threatened and require protection. Wild A. venetum resources are limited relative to market demand and a poor understanding of the composition of A. venetum at the molecular level. The chloroplast genome contains genetic markers for phylogenetic analysis, genetic diversity evaluation, and molecular identification. In this study, the entire genome of the A. venetum chloroplast was sequenced and analyzed. The A. venetum cp genome is 150,878 bp, with a pair of inverted repeat regions (IRA and IRB). Each inverted repeat region is 25,810 bp, which consist of large (LSC, 81,951 bp) and small (SSC, 17,307 bp) single copy areas. The genome-wide GC content was 38.35%, LSC made up 36.49%, SSC made up 32.41%, and IR made up 43.3%. The A. venetum chloroplast genome encodes 131 genes, including 86 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. This study identified the unique characteristics of the A. venetum chloroplast genome, which will help formulate effective conservation and management strategies as well as molecular identification approaches for this important medicinal plant.https://doi.org/10.1371/journal.pone.0261710 |
| spellingShingle | Xiaonong Guo Zhuanxia Wang Deyu Cai Lei Song Jialin Bai The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L. PLoS ONE |
| title | The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L. |
| title_full | The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L. |
| title_fullStr | The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L. |
| title_full_unstemmed | The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L. |
| title_short | The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L. |
| title_sort | chloroplast genome sequence and phylogenetic analysis of apocynum venetum l |
| url | https://doi.org/10.1371/journal.pone.0261710 |
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