The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H....
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2003260 |
| _version_ | 1797638708407566336 |
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| author | Xinlian Yu Xin Li Xiaohua Yao Youhua Yao Yixiong Bai Likun An Kunlun Wu |
| author_facet | Xinlian Yu Xin Li Xiaohua Yao Youhua Yao Yixiong Bai Likun An Kunlun Wu |
| author_sort | Xinlian Yu |
| collection | DOAJ |
| description | Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H. distichon was sequenced and analyzed: the size of the chloroplast genome is 136,462 bp in length, including a large single copy region (LSC) of 80,597 bp, a small single copy region (SSC) of 12,701 bp, and a pair of inverted repeated regions (IR) of 21,582 bp; the H. distichon chloroplast genome encodes 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes; the overall GC-content of the chloroplast genome was 38.32%, with the LSC, SSC, and IR regions being 36.31%, 32.33%, and 43.83%, respectively. Phylogenetic analysis based on 32 species with the maximum likelihood (ML) method indicated that H. distichon was closely related to Hordeum vulgare. |
| first_indexed | 2024-03-11T13:06:30Z |
| format | Article |
| id | doaj.art-67a229701ba84d4ab6afa442451e241a |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:30Z |
| publishDate | 2021-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-67a229701ba84d4ab6afa442451e241a2023-11-03T14:36:00ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-12-016123482348410.1080/23802359.2021.20032602003260The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)Xinlian Yu0Xin Li1Xiaohua Yao2Youhua Yao3Yixiong Bai4Likun An5Kunlun Wu6Academy of Agricultural and Forestry Sciences, Qinghai UniversityAcademy of Agricultural and Forestry Sciences, Qinghai UniversityAcademy of Agricultural and Forestry Sciences, Qinghai UniversityAcademy of Agricultural and Forestry Sciences, Qinghai UniversityAcademy of Agricultural and Forestry Sciences, Qinghai UniversityAcademy of Agricultural and Forestry Sciences, Qinghai UniversityAcademy of Agricultural and Forestry Sciences, Qinghai UniversityHordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H. distichon was sequenced and analyzed: the size of the chloroplast genome is 136,462 bp in length, including a large single copy region (LSC) of 80,597 bp, a small single copy region (SSC) of 12,701 bp, and a pair of inverted repeated regions (IR) of 21,582 bp; the H. distichon chloroplast genome encodes 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes; the overall GC-content of the chloroplast genome was 38.32%, with the LSC, SSC, and IR regions being 36.31%, 32.33%, and 43.83%, respectively. Phylogenetic analysis based on 32 species with the maximum likelihood (ML) method indicated that H. distichon was closely related to Hordeum vulgare.http://dx.doi.org/10.1080/23802359.2021.2003260hordeum distichonchloroplast genomephylogenetic relationshiptriticeae |
| spellingShingle | Xinlian Yu Xin Li Xiaohua Yao Youhua Yao Yixiong Bai Likun An Kunlun Wu The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) Mitochondrial DNA. Part B. Resources hordeum distichon chloroplast genome phylogenetic relationship triticeae |
| title | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
| title_full | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
| title_fullStr | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
| title_short | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
| title_sort | complete chloroplast genome sequence of hordeum distichon poales poaceae |
| topic | hordeum distichon chloroplast genome phylogenetic relationship triticeae |
| url | http://dx.doi.org/10.1080/23802359.2021.2003260 |
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