Novel transposable elements from <it>Anopheles gambiae</it>
<p>Abstract</p> <p>Background</p> <p>Transposable elements (TEs) are DNA sequences, present in the genome of most eukaryotic organisms that hold the key characteristic of being able to mobilize and increase their copy number within chromosomes. These elements are import...
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| Format: | Article |
| Language: | English |
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BMC
2011-05-01
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| Series: | BMC Genomics |
| Online Access: | http://www.biomedcentral.com/1471-2164/12/260 |
| _version_ | 1818689873706483712 |
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| author | Ribeiro José MC Struchiner Cláudio J Fernández-Medina Rita D |
| author_facet | Ribeiro José MC Struchiner Cláudio J Fernández-Medina Rita D |
| author_sort | Ribeiro José MC |
| collection | DOAJ |
| description | <p>Abstract</p> <p>Background</p> <p>Transposable elements (TEs) are DNA sequences, present in the genome of most eukaryotic organisms that hold the key characteristic of being able to mobilize and increase their copy number within chromosomes. These elements are important for eukaryotic genome structure and evolution and lately have been considered as potential drivers for introducing transgenes into pathogen-transmitting insects as a means to control vector-borne diseases. The aim of this work was to catalog the diversity and abundance of TEs within the <it>Anopheles gambiae </it>genome using the PILER tool and to consolidate a database in the form of a hyperlinked spreadsheet containing detailed and readily available information about the TEs present in the genome of <it>An. gambiae</it>.</p> <p>Results</p> <p>Here we present the spreadsheet named AnoTExcel that constitutes a database with detailed information on most of the repetitive elements present in the genome of the mosquito. Despite previous work on this topic, our approach permitted the identification and characterization both of previously described and novel TEs that are further described in detailed.</p> <p>Conclusions</p> <p>Identification and characterization of TEs in a given genome is important as a way to understand the diversity and evolution of the whole set of TEs present in a given species. This work contributes to a better understanding of the landscape of TEs present in the mosquito genome. It also presents a novel platform for the identification, analysis, and characterization of TEs on sequenced genomes.</p> |
| first_indexed | 2024-12-17T12:17:02Z |
| format | Article |
| id | doaj.art-68111ecb20cc4f9fbcc44fb981248ce5 |
| institution | Directory Open Access Journal |
| issn | 1471-2164 |
| language | English |
| last_indexed | 2024-12-17T12:17:02Z |
| publishDate | 2011-05-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomics |
| spelling | doaj.art-68111ecb20cc4f9fbcc44fb981248ce52022-12-21T21:49:07ZengBMCBMC Genomics1471-21642011-05-0112126010.1186/1471-2164-12-260Novel transposable elements from <it>Anopheles gambiae</it>Ribeiro José MCStruchiner Cláudio JFernández-Medina Rita D<p>Abstract</p> <p>Background</p> <p>Transposable elements (TEs) are DNA sequences, present in the genome of most eukaryotic organisms that hold the key characteristic of being able to mobilize and increase their copy number within chromosomes. These elements are important for eukaryotic genome structure and evolution and lately have been considered as potential drivers for introducing transgenes into pathogen-transmitting insects as a means to control vector-borne diseases. The aim of this work was to catalog the diversity and abundance of TEs within the <it>Anopheles gambiae </it>genome using the PILER tool and to consolidate a database in the form of a hyperlinked spreadsheet containing detailed and readily available information about the TEs present in the genome of <it>An. gambiae</it>.</p> <p>Results</p> <p>Here we present the spreadsheet named AnoTExcel that constitutes a database with detailed information on most of the repetitive elements present in the genome of the mosquito. Despite previous work on this topic, our approach permitted the identification and characterization both of previously described and novel TEs that are further described in detailed.</p> <p>Conclusions</p> <p>Identification and characterization of TEs in a given genome is important as a way to understand the diversity and evolution of the whole set of TEs present in a given species. This work contributes to a better understanding of the landscape of TEs present in the mosquito genome. It also presents a novel platform for the identification, analysis, and characterization of TEs on sequenced genomes.</p>http://www.biomedcentral.com/1471-2164/12/260 |
| spellingShingle | Ribeiro José MC Struchiner Cláudio J Fernández-Medina Rita D Novel transposable elements from <it>Anopheles gambiae</it> BMC Genomics |
| title | Novel transposable elements from <it>Anopheles gambiae</it> |
| title_full | Novel transposable elements from <it>Anopheles gambiae</it> |
| title_fullStr | Novel transposable elements from <it>Anopheles gambiae</it> |
| title_full_unstemmed | Novel transposable elements from <it>Anopheles gambiae</it> |
| title_short | Novel transposable elements from <it>Anopheles gambiae</it> |
| title_sort | novel transposable elements from it anopheles gambiae it |
| url | http://www.biomedcentral.com/1471-2164/12/260 |
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