PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5]

Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for thir...

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Bibliographic Details
Main Authors: Gustavo A. Salazar, Ayton Meintjes, Nicola Mulder
Format: Article
Language:English
Published: F1000 Research Ltd 2014-02-01
Series:F1000Research
Subjects:
Online Access:http://f1000research.com/articles/3-50/v1
Description
Summary:Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for third-party plugins. We provide examples of interaction networks and how the components can be used to visualize them, and refer to a more complex tool that uses these components. Availability: http://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7753
ISSN:2046-1402