PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5]
Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for thir...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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F1000 Research Ltd
2014-02-01
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| Series: | F1000Research |
| Subjects: | |
| Online Access: | http://f1000research.com/articles/3-50/v1 |
| _version_ | 1818277061456822272 |
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| author | Gustavo A. Salazar Ayton Meintjes Nicola Mulder |
| author_facet | Gustavo A. Salazar Ayton Meintjes Nicola Mulder |
| author_sort | Gustavo A. Salazar |
| collection | DOAJ |
| description | Summary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for third-party plugins. We provide examples of interaction networks and how the components can be used to visualize them, and refer to a more complex tool that uses these components. Availability: http://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7753 |
| first_indexed | 2024-12-12T22:55:33Z |
| format | Article |
| id | doaj.art-685cff63d1c14f1eba9abc4b2bf5625d |
| institution | Directory Open Access Journal |
| issn | 2046-1402 |
| language | English |
| last_indexed | 2024-12-12T22:55:33Z |
| publishDate | 2014-02-01 |
| publisher | F1000 Research Ltd |
| record_format | Article |
| series | F1000Research |
| spelling | doaj.art-685cff63d1c14f1eba9abc4b2bf5625d2022-12-22T00:08:57ZengF1000 Research LtdF1000Research2046-14022014-02-01310.12688/f1000research.3-50.v13677PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5]Gustavo A. Salazar0Ayton Meintjes1Nicola Mulder2Computational Biology Group, University of Cape Town, Cape Town, South AfricaComputational Biology Group, University of Cape Town, Cape Town, South AfricaComputational Biology Group, University of Cape Town, Cape Town, South AfricaSummary: We present two web-based components for the display of Protein-Protein Interaction networks using different self-organizing layout methods: force-directed and circular. These components conform to the BioJS standard and can be rendered in an HTML5-compliant browser without the need for third-party plugins. We provide examples of interaction networks and how the components can be used to visualize them, and refer to a more complex tool that uses these components. Availability: http://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7753http://f1000research.com/articles/3-50/v1Bioinformatics |
| spellingShingle | Gustavo A. Salazar Ayton Meintjes Nicola Mulder PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5] F1000Research Bioinformatics |
| title | PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5] |
| title_full | PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5] |
| title_fullStr | PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5] |
| title_full_unstemmed | PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5] |
| title_short | PPI layouts: BioJS components for the display of Protein-Protein Interactions [v1; ref status: indexed, http://f1000r.es/2u5] |
| title_sort | ppi layouts biojs components for the display of protein protein interactions v1 ref status indexed http f1000r es 2u5 |
| topic | Bioinformatics |
| url | http://f1000research.com/articles/3-50/v1 |
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