Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifolia
Pistacia chinensis and Pistacia weinmannifolia are small trees and are distributed in East Asia, in particular China. The data on P. chinensis presented in this article is associated with the research article, “DOI: 10.5010/JPB.2019.46.4.274” [1]. Both P. chinensis and P. weinmannifolia have long be...
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| Format: | Article |
| Language: | English |
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Elsevier
2024-02-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340923010326 |
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| author | Azeez Bimpe Suliyat Dewi Komang Anggita Hee Soo Yang Sang-Woo Lee Wan Yi Li Sang-Ho Choi Ki-Young Choi Jong-Kuk Na |
| author_facet | Azeez Bimpe Suliyat Dewi Komang Anggita Hee Soo Yang Sang-Woo Lee Wan Yi Li Sang-Ho Choi Ki-Young Choi Jong-Kuk Na |
| author_sort | Azeez Bimpe Suliyat |
| collection | DOAJ |
| description | Pistacia chinensis and Pistacia weinmannifolia are small trees and are distributed in East Asia, in particular China. The data on P. chinensis presented in this article is associated with the research article, “DOI: 10.5010/JPB.2019.46.4.274” [1]. Both P. chinensis and P. weinmannifolia have long been used as ethnobotanical plants to treat various illnesses, including dysentery, inflammatory swelling, rheumatism, liver diseases, influenza, lung cancer, etc. Many studies have been carried out to delve into the pharmaceutical properties of these Pistacia species using plant extracts, but genomic studies are very rarely performed to date. To enrich the genetic information of these two species, RNA sequencing was conducted using a pair-end Illumina HiSeq2500 sequencing system, resulting in 2.6 G of raw data from P. chinensis (Accession no: SRR10136265) and 2.7 G bases from P. weinmannifolia (Accession no: SRR10136264). Transcriptome shotgun assembly using three different assembly tools generated a total of 18,524 non-redundant contigs (N50, 1104 bp) from P. chinensis and 18,956 from P. weinmannifolia (N50, 1137 bp). The data is accessible at NCBI BioProject: PRJNA566127. These data would be crucial for the identification of genes associated with the compounds exerting pharmaceutical properties and also for molecular marker development. |
| first_indexed | 2024-03-08T03:30:19Z |
| format | Article |
| id | doaj.art-686640b6299e4607985e71dfa821dd34 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-03-08T03:30:19Z |
| publishDate | 2024-02-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-686640b6299e4607985e71dfa821dd342024-02-11T05:10:56ZengElsevierData in Brief2352-34092024-02-0152110002Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifoliaAzeez Bimpe Suliyat0Dewi Komang Anggita1Hee Soo Yang2Sang-Woo Lee3Wan Yi Li4Sang-Ho Choi5Ki-Young Choi6Jong-Kuk Na7Department of Agriculture and Industries, Graduate School, Kangwon National University, Chuncheon 24341, South KoreaDepartment of Agriculture and Industries, Graduate School, Kangwon National University, Chuncheon 24341, South KoreaDepartment of Agriculture and Industries, Graduate School, Kangwon National University, Chuncheon 24341, South KoreaInternational Biological Material Research Center, KRIBB, Daejeon 34141, South Korea; Institute of Medicinal Plants, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan 650200, PR ChinaInstitute of Medicinal Plants, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan 650200, PR ChinaInternational Biological Material Research Center, KRIBB, Daejeon 34141, South KoreaDepartment of SmartFarm and Agricultural Industries, Kangwon National University, Chuncheon, Kangwon 24341, South KoreaDepartment of Agriculture and Industries, Graduate School, Kangwon National University, Chuncheon 24341, South Korea; Department of SmartFarm and Agricultural Industries, Kangwon National University, Chuncheon, Kangwon 24341, South Korea; Corresponding author.Pistacia chinensis and Pistacia weinmannifolia are small trees and are distributed in East Asia, in particular China. The data on P. chinensis presented in this article is associated with the research article, “DOI: 10.5010/JPB.2019.46.4.274” [1]. Both P. chinensis and P. weinmannifolia have long been used as ethnobotanical plants to treat various illnesses, including dysentery, inflammatory swelling, rheumatism, liver diseases, influenza, lung cancer, etc. Many studies have been carried out to delve into the pharmaceutical properties of these Pistacia species using plant extracts, but genomic studies are very rarely performed to date. To enrich the genetic information of these two species, RNA sequencing was conducted using a pair-end Illumina HiSeq2500 sequencing system, resulting in 2.6 G of raw data from P. chinensis (Accession no: SRR10136265) and 2.7 G bases from P. weinmannifolia (Accession no: SRR10136264). Transcriptome shotgun assembly using three different assembly tools generated a total of 18,524 non-redundant contigs (N50, 1104 bp) from P. chinensis and 18,956 from P. weinmannifolia (N50, 1137 bp). The data is accessible at NCBI BioProject: PRJNA566127. These data would be crucial for the identification of genes associated with the compounds exerting pharmaceutical properties and also for molecular marker development.http://www.sciencedirect.com/science/article/pii/S2352340923010326EthnobotanicalIllumina HiSeq2500RNA-seqSmall treeTranscriptome shotgun assembly |
| spellingShingle | Azeez Bimpe Suliyat Dewi Komang Anggita Hee Soo Yang Sang-Woo Lee Wan Yi Li Sang-Ho Choi Ki-Young Choi Jong-Kuk Na Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifolia Data in Brief Ethnobotanical Illumina HiSeq2500 RNA-seq Small tree Transcriptome shotgun assembly |
| title | Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifolia |
| title_full | Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifolia |
| title_fullStr | Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifolia |
| title_full_unstemmed | Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifolia |
| title_short | Transcriptome dataset of two Pistacia species: Pistacia chinensis and Pistacia weinmannifolia |
| title_sort | transcriptome dataset of two pistacia species pistacia chinensis and pistacia weinmannifolia |
| topic | Ethnobotanical Illumina HiSeq2500 RNA-seq Small tree Transcriptome shotgun assembly |
| url | http://www.sciencedirect.com/science/article/pii/S2352340923010326 |
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