Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L.
Species belonging to the genus Pseudomonas is a rod shaped Gram-negative bacteria emerged as an important silkworm pathogen with broad-level multi-drug resistance. Theextensive usage of antimicrobials in sericulture farming is gradually leading to the emergence of multi-drug resistance (MDR) strains...
| Main Authors: | , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2024-06-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340924002622 |
| _version_ | 1797259931663990784 |
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| author | Rittick Mondal Paulami Dam Joydeep Chakraborty Shubhajit Shaw Sayantan Pradhan Sandip Das Jannatun Nesa Khemraj Meena Amit Ghati Sandip Dev Chaudhuri Debjoy Bhattacharjee Vivekananda Mandal Biraj Sarkar Amit Kumar Mandal |
| author_facet | Rittick Mondal Paulami Dam Joydeep Chakraborty Shubhajit Shaw Sayantan Pradhan Sandip Das Jannatun Nesa Khemraj Meena Amit Ghati Sandip Dev Chaudhuri Debjoy Bhattacharjee Vivekananda Mandal Biraj Sarkar Amit Kumar Mandal |
| author_sort | Rittick Mondal |
| collection | DOAJ |
| description | Species belonging to the genus Pseudomonas is a rod shaped Gram-negative bacteria emerged as an important silkworm pathogen with broad-level multi-drug resistance. Theextensive usage of antimicrobials in sericulture farming is gradually leading to the emergence of multi-drug resistance (MDR) strains, posing a significant threat to the well-being of both Bombyx mori L. and serifarmers. Pseudomonas spp. with MDR level may gets transmitted from the infected silkworm to human handlers either via direct contact or through contaminated feces. To understand the emerging concern of antimicrobial resistance (AMR) in Pseudomonas spp. provides insights into their genomic information. Here, we present the draft genome sequence data of Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. from the silkworm rearing house of Raiganj University, India and sequenced using the Illumina NovaSeq 6000 platform. The estimated genome size of the strain was 4494347 bp with a G + C content of 63.5%. The de novo assembly of the genome generated 38 contigs with an N50 of 200 kb. Our data might help to reveal the genetic diversity, underlying mechanisms of AMR and virulence potential of Pseudomonas spp. This draft-genome shotgun project has been deposited under the NCBI GenBank accession number NZ_JAUTXS000000000. |
| first_indexed | 2024-04-24T23:17:16Z |
| format | Article |
| id | doaj.art-686687b92f034c079c9871240e3215cd |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-24T23:17:16Z |
| publishDate | 2024-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-686687b92f034c079c9871240e3215cd2024-03-17T07:54:39ZengElsevierData in Brief2352-34092024-06-0154110293Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L.Rittick Mondal0Paulami Dam1Joydeep Chakraborty2Shubhajit Shaw3Sayantan Pradhan4Sandip Das5Jannatun Nesa6Khemraj Meena7Amit Ghati8Sandip Dev Chaudhuri9Debjoy Bhattacharjee10Vivekananda Mandal11Biraj Sarkar12Amit Kumar Mandal13Department of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, IndiaDepartment of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, IndiaDepartment of Microbiology, Raiganj University, North Dinajpur, West Bengal 733134, IndiaDepartment of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, IndiaDepartment of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, IndiaDepartment of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, IndiaDepartment of Zoology, Gangarampur College, Dakshin Dinajpur, West Bengal 733124, IndiaDepartment of Biotechnology, School of Life Sciences, Central University of Rajasthan, Kishangarh, Rajasthan 305817, IndiaDepartment of Microbiology, Barrackpore Rastraguru Surendranath College, Barrackpore, West Bengal 700120, IndiaDepartment of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, IndiaDepartment of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, IndiaPlant and Microbial Physiology and Biochemistry Laboratory, Department of Botany, University of Gour Banga, Malda, West Bengal 732103, IndiaFaculty of Allied Health Sciences (FAHS), The ICFAI University, Tripura; Kamalghat, Mohanpur, West Tripura 799210, India; Corresponding authors.Department of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, India; Corresponding authors.Species belonging to the genus Pseudomonas is a rod shaped Gram-negative bacteria emerged as an important silkworm pathogen with broad-level multi-drug resistance. Theextensive usage of antimicrobials in sericulture farming is gradually leading to the emergence of multi-drug resistance (MDR) strains, posing a significant threat to the well-being of both Bombyx mori L. and serifarmers. Pseudomonas spp. with MDR level may gets transmitted from the infected silkworm to human handlers either via direct contact or through contaminated feces. To understand the emerging concern of antimicrobial resistance (AMR) in Pseudomonas spp. provides insights into their genomic information. Here, we present the draft genome sequence data of Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. from the silkworm rearing house of Raiganj University, India and sequenced using the Illumina NovaSeq 6000 platform. The estimated genome size of the strain was 4494347 bp with a G + C content of 63.5%. The de novo assembly of the genome generated 38 contigs with an N50 of 200 kb. Our data might help to reveal the genetic diversity, underlying mechanisms of AMR and virulence potential of Pseudomonas spp. This draft-genome shotgun project has been deposited under the NCBI GenBank accession number NZ_JAUTXS000000000.http://www.sciencedirect.com/science/article/pii/S2352340924002622SilkwormAntimicrobial resistance (AMR)Illumina NovaSeq 6000Genetic diversity |
| spellingShingle | Rittick Mondal Paulami Dam Joydeep Chakraborty Shubhajit Shaw Sayantan Pradhan Sandip Das Jannatun Nesa Khemraj Meena Amit Ghati Sandip Dev Chaudhuri Debjoy Bhattacharjee Vivekananda Mandal Biraj Sarkar Amit Kumar Mandal Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. Data in Brief Silkworm Antimicrobial resistance (AMR) Illumina NovaSeq 6000 Genetic diversity |
| title | Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. |
| title_full | Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. |
| title_fullStr | Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. |
| title_full_unstemmed | Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. |
| title_short | Genomic dataset of a multiple-drug resistant Pseudomonas sp. strain RAC1 isolated from a flacherie infected Nistari race of Bombyx mori L. |
| title_sort | genomic dataset of a multiple drug resistant pseudomonas sp strain rac1 isolated from a flacherie infected nistari race of bombyx mori l |
| topic | Silkworm Antimicrobial resistance (AMR) Illumina NovaSeq 6000 Genetic diversity |
| url | http://www.sciencedirect.com/science/article/pii/S2352340924002622 |
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