Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability
Clostridium thermocellum is a potent cellulolytic bacterium. C. thermocellum strain PAL5, was derived from strain S14 that was isolated from bagasse paper sludge, possesses higher cellulose-degradation ability than representative strains ATCC27405 and DSM1313. In this work, we determined the draft g...
| Main Authors: | , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2019-08-01
|
| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340919306286 |
| _version_ | 1817987753251438592 |
|---|---|
| author | Eiko Nakazono-Nagaoka Takashi Fujikawa Ayumi Shikata Chakrit Tachaapaikoon Rattiya Waeonukul Patthra Pason Khanok Ratanakhanokchai Akihiko Kosugi |
| author_facet | Eiko Nakazono-Nagaoka Takashi Fujikawa Ayumi Shikata Chakrit Tachaapaikoon Rattiya Waeonukul Patthra Pason Khanok Ratanakhanokchai Akihiko Kosugi |
| author_sort | Eiko Nakazono-Nagaoka |
| collection | DOAJ |
| description | Clostridium thermocellum is a potent cellulolytic bacterium. C. thermocellum strain PAL5, was derived from strain S14 that was isolated from bagasse paper sludge, possesses higher cellulose-degradation ability than representative strains ATCC27405 and DSM1313. In this work, we determined the draft genome sequence of C. thermocellum PAL5. Genomic DNA was used for whole-genome sequencing using the Illumina HiSeq 2500. We obtained 215 contigs of >200 bp (N50, 78,366 bp; mean length, 17,378 bp). The assembled data were subjected to the National Center for Biotechnology Information (NCBI) Prokaryotic Genome Annotation Pipeline, and 3198 protein-coding sequences, 53 tRNA genes, and 4 rRNA genes were identified. The data are accessible at NCBI (the accession number SBHL00000000). Our data resource will facilitate further studies of efficient cellulose-degradation using C. thermocellum. Keywords: Clostridium thermocellum, Cellulose, Cellulose-degradation, Draft genome sequence |
| first_indexed | 2024-04-14T00:25:41Z |
| format | Article |
| id | doaj.art-690b2552a3b04d20b042a47c733ec0d3 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-14T00:25:41Z |
| publishDate | 2019-08-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-690b2552a3b04d20b042a47c733ec0d32022-12-22T02:22:45ZengElsevierData in Brief2352-34092019-08-0125Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation abilityEiko Nakazono-Nagaoka0Takashi Fujikawa1Ayumi Shikata2Chakrit Tachaapaikoon3Rattiya Waeonukul4Patthra Pason5Khanok Ratanakhanokchai6Akihiko Kosugi7Biological Resources and Post-Harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), JapanInstitute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), JapanBiological Resources and Post-Harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), JapanPilot Plant Development and Training Institute (PDTI), King Mongkut's University of Technology Thonburi (KMUTT), ThailandPilot Plant Development and Training Institute (PDTI), King Mongkut's University of Technology Thonburi (KMUTT), ThailandPilot Plant Development and Training Institute (PDTI), King Mongkut's University of Technology Thonburi (KMUTT), ThailandEnzyme Technology Laboratory, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (KMUTT), ThailandBiological Resources and Post-Harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Japan; Corresponding author.Clostridium thermocellum is a potent cellulolytic bacterium. C. thermocellum strain PAL5, was derived from strain S14 that was isolated from bagasse paper sludge, possesses higher cellulose-degradation ability than representative strains ATCC27405 and DSM1313. In this work, we determined the draft genome sequence of C. thermocellum PAL5. Genomic DNA was used for whole-genome sequencing using the Illumina HiSeq 2500. We obtained 215 contigs of >200 bp (N50, 78,366 bp; mean length, 17,378 bp). The assembled data were subjected to the National Center for Biotechnology Information (NCBI) Prokaryotic Genome Annotation Pipeline, and 3198 protein-coding sequences, 53 tRNA genes, and 4 rRNA genes were identified. The data are accessible at NCBI (the accession number SBHL00000000). Our data resource will facilitate further studies of efficient cellulose-degradation using C. thermocellum. Keywords: Clostridium thermocellum, Cellulose, Cellulose-degradation, Draft genome sequencehttp://www.sciencedirect.com/science/article/pii/S2352340919306286 |
| spellingShingle | Eiko Nakazono-Nagaoka Takashi Fujikawa Ayumi Shikata Chakrit Tachaapaikoon Rattiya Waeonukul Patthra Pason Khanok Ratanakhanokchai Akihiko Kosugi Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability Data in Brief |
| title | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
| title_full | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
| title_fullStr | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
| title_full_unstemmed | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
| title_short | Draft genome sequence data of Clostridium thermocellum PAL5 possessing high cellulose-degradation ability |
| title_sort | draft genome sequence data of clostridium thermocellum pal5 possessing high cellulose degradation ability |
| url | http://www.sciencedirect.com/science/article/pii/S2352340919306286 |
| work_keys_str_mv | AT eikonakazononagaoka draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability AT takashifujikawa draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability AT ayumishikata draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability AT chakrittachaapaikoon draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability AT rattiyawaeonukul draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability AT patthrapason draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability AT khanokratanakhanokchai draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability AT akihikokosugi draftgenomesequencedataofclostridiumthermocellumpal5possessinghighcellulosedegradationability |