Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>)
AbstractAlthough being some of the most valuable and heavily exploited wild organisms, few fisheries species have been studied at the whole-genome level. This is especially the case in New Zealand, where genomics resources are urgently needed to assist fisheries management. Here, we...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Oxford University Press
2022-12-01
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| Series: | G3: Genes, Genomes, Genetics |
| Online Access: | https://academic.oup.com/g3journal/article-lookup/doi/10.1093/g3journal/jkac315 |
| _version_ | 1797785729218117632 |
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| author | Yvan Papa Maren Wellenreuther Mark A Morrison Peter A Ritchie |
| author_facet | Yvan Papa Maren Wellenreuther Mark A Morrison Peter A Ritchie |
| author_sort | Yvan Papa |
| collection | DOAJ |
| description |
AbstractAlthough being some of the most valuable and heavily exploited wild organisms, few fisheries species have been studied at the whole-genome level. This is especially the case in New Zealand, where genomics resources are urgently needed to assist fisheries management. Here, we generated 55 Gb of short Illumina reads (92× coverage) and 73 Gb of long Nanopore reads (122×) to produce the first genome assembly of the marine teleost tarakihi [Nemadactylus macropterusk |
| first_indexed | 2024-03-13T00:58:07Z |
| format | Article |
| id | doaj.art-6a3a2aaf6549403ea137b184eab88519 |
| institution | Directory Open Access Journal |
| issn | 2160-1836 |
| language | English |
| last_indexed | 2024-03-13T00:58:07Z |
| publishDate | 2022-12-01 |
| publisher | Oxford University Press |
| record_format | Article |
| series | G3: Genes, Genomes, Genetics |
| spelling | doaj.art-6a3a2aaf6549403ea137b184eab885192023-07-06T14:25:11ZengOxford University PressG3: Genes, Genomes, Genetics2160-18362022-12-0113210.1093/g3journal/jkac315Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>)Yvan Papa0https://orcid.org/0000-0002-8915-2566Maren Wellenreuther1https://orcid.org/0000-0002-2764-8291Mark A Morrison2Peter A Ritchie3School of Biological Sciences, Victoria University of Wellington, Wellington 6012, New ZealandSeafood Production Group, The New Zealand Institute for Plant and Food Research Limited, Nelson 7010, New ZealandNational Institute of Water and Atmospheric Research, Auckland 1010, New ZealandSchool of Biological Sciences, Victoria University of Wellington, Wellington 6012, New Zealand AbstractAlthough being some of the most valuable and heavily exploited wild organisms, few fisheries species have been studied at the whole-genome level. This is especially the case in New Zealand, where genomics resources are urgently needed to assist fisheries management. Here, we generated 55 Gb of short Illumina reads (92× coverage) and 73 Gb of long Nanopore reads (122×) to produce the first genome assembly of the marine teleost tarakihi [Nemadactylus macropteruskhttps://academic.oup.com/g3journal/article-lookup/doi/10.1093/g3journal/jkac315 |
| spellingShingle | Yvan Papa Maren Wellenreuther Mark A Morrison Peter A Ritchie Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>) G3: Genes, Genomes, Genetics |
| title | Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>) |
| title_full | Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>) |
| title_fullStr | Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>) |
| title_full_unstemmed | Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>) |
| title_short | Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (<i>Nemadactylus macropterus</i>) |
| title_sort | genome assembly and isoform analysis of a highly heterozygous new zealand fisheries species the tarakihi i nemadactylus macropterus i |
| url | https://academic.oup.com/g3journal/article-lookup/doi/10.1093/g3journal/jkac315 |
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