Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China
Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1823277 |
| _version_ | 1827772692854472704 |
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| author | Guang-Can Zhou Jie-Yu Wang Wen Li Ming Zhang Guo-Qing Meng Heng-Yi Wang Xiao Chen Yu-Han Wu Ping Wu Yi-Lei Wang |
| author_facet | Guang-Can Zhou Jie-Yu Wang Wen Li Ming Zhang Guo-Qing Meng Heng-Yi Wang Xiao Chen Yu-Han Wu Ping Wu Yi-Lei Wang |
| author_sort | Guang-Can Zhou |
| collection | DOAJ |
| description | Chimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single copy (SSC) region of 19,767 bp and two identical inverted repeat regions (IRs) of 23,249 bp. The overall GC contents of the plastome were 39.27%. A total of 114 unique genes were successfully annotated consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Sixteen genes each possessed one intron and three genes had two introns. The ML phylogenetic analysis supports Chimonanthus as sister to Calycanthus. This result will be helpful for genetic breeding and population genetics of C. praecox, DNA barcoding of Chimonanthus, and phylogenetic studies of Calycanthaceae. |
| first_indexed | 2024-03-11T13:12:35Z |
| format | Article |
| id | doaj.art-6b2bd5792f1f4b7c958a9a583d62fdc8 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:35Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-6b2bd5792f1f4b7c958a9a583d62fdc82023-11-03T14:00:33ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533469347110.1080/23802359.2020.18232771823277Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in ChinaGuang-Can Zhou0Jie-Yu Wang1Wen Li2Ming Zhang3Guo-Qing Meng4Heng-Yi Wang5Xiao Chen6Yu-Han Wu7Ping Wu8Yi-Lei Wang9College of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityKey Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesCollege of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityCollege of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityCollege of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityCollege of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityCollege of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityCollege of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityNational Facility for Protein Science in Shanghai, Shanghai Advanced Research Institute, Chinese Academy of SciencesCollege of Agricultural and Biological Engineering (College of Tree Peony), Heze UniversityChimonanthus praecox, a deciduous shrub tree, is endemic to China and widely cultivated in the world as a popular garden and ornamental plant. Here, we have reported its complete chloroplast genome with a length of 153,181 bp, containing a large single copy (LSC) region of 86,916 bp, a small single copy (SSC) region of 19,767 bp and two identical inverted repeat regions (IRs) of 23,249 bp. The overall GC contents of the plastome were 39.27%. A total of 114 unique genes were successfully annotated consisting of 80 protein-coding genes, 30 tRNA genes and four rRNA genes. Sixteen genes each possessed one intron and three genes had two introns. The ML phylogenetic analysis supports Chimonanthus as sister to Calycanthus. This result will be helpful for genetic breeding and population genetics of C. praecox, DNA barcoding of Chimonanthus, and phylogenetic studies of Calycanthaceae.http://dx.doi.org/10.1080/23802359.2020.1823277chimonanthus praecoxcomplete chloroplast genomeillumina sequencingcalycanthaceaephylogeny |
| spellingShingle | Guang-Can Zhou Jie-Yu Wang Wen Li Ming Zhang Guo-Qing Meng Heng-Yi Wang Xiao Chen Yu-Han Wu Ping Wu Yi-Lei Wang Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China Mitochondrial DNA. Part B. Resources chimonanthus praecox complete chloroplast genome illumina sequencing calycanthaceae phylogeny |
| title | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
| title_full | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
| title_fullStr | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
| title_full_unstemmed | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
| title_short | Complete chloroplast genome sequence of Chimonanthus praecox link (Calycanthaceae): an endemic plant species in China |
| title_sort | complete chloroplast genome sequence of chimonanthus praecox link calycanthaceae an endemic plant species in china |
| topic | chimonanthus praecox complete chloroplast genome illumina sequencing calycanthaceae phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2020.1823277 |
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