Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement
Sesame is one of the important traditional oil crops in the world, and has high economic and nutritional value. Recently, due to the novel high throughput sequencing techniques and bioinformatical methods, the study of the genomics, methylomics, transcriptomics, proteomics and metabonomics of sesame...
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MDPI AG
2023-02-01
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| Series: | International Journal of Molecular Sciences |
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| Online Access: | https://www.mdpi.com/1422-0067/24/4/3105 |
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| author | Huan Li Muhammad Tahir ul Qamar Li Yang Junchao Liang Jun You Linhai Wang |
| author_facet | Huan Li Muhammad Tahir ul Qamar Li Yang Junchao Liang Jun You Linhai Wang |
| author_sort | Huan Li |
| collection | DOAJ |
| description | Sesame is one of the important traditional oil crops in the world, and has high economic and nutritional value. Recently, due to the novel high throughput sequencing techniques and bioinformatical methods, the study of the genomics, methylomics, transcriptomics, proteomics and metabonomics of sesame has developed rapidly. Thus far, the genomes of five sesame accessions have been released, including white and black seed sesame. The genome studies reveal the function and structure of the sesame genome, and facilitate the exploitation of molecular markers, the construction of genetic maps and the study of pan-genomes. Methylomics focus on the study of the molecular level changes under different environmental conditions. Transcriptomics provide a powerful tool to study abiotic/biotic stress, organ development, and noncoding RNAs, and proteomics and metabonomics also provide some support in studying abiotic stress and important traits. In addition, the opportunities and challenges of multi-omics in sesame genetics breeding were also described. This review summarizes the current research status of sesame from the perspectives of multi-omics and hopes to provide help for further in-depth research on sesame. |
| first_indexed | 2024-03-11T08:44:00Z |
| format | Article |
| id | doaj.art-6b71ca96891943809a3f7e095cb56bbf |
| institution | Directory Open Access Journal |
| issn | 1661-6596 1422-0067 |
| language | English |
| last_indexed | 2024-03-11T08:44:00Z |
| publishDate | 2023-02-01 |
| publisher | MDPI AG |
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| series | International Journal of Molecular Sciences |
| spelling | doaj.art-6b71ca96891943809a3f7e095cb56bbf2023-11-16T20:55:18ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672023-02-01244310510.3390/ijms24043105Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic ImprovementHuan Li0Muhammad Tahir ul Qamar1Li Yang2Junchao Liang3Jun You4Linhai Wang5Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, ChinaIntegrative Omics and Molecular Modeling Laboratory, Department of Bioinformatics and Biotechnology, Government College University Faisalabad (GCUF), Faisalabad 38000, PakistanKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, ChinaJiangxi Province Key Laboratory of Oil Crops Biology, Crop Research Institute, Nanchang Branch of National Center of Oil Crops Improvement, Jiangxi Academy of Agricultural Sciences, Nanchang 330000, ChinaKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, ChinaKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, ChinaSesame is one of the important traditional oil crops in the world, and has high economic and nutritional value. Recently, due to the novel high throughput sequencing techniques and bioinformatical methods, the study of the genomics, methylomics, transcriptomics, proteomics and metabonomics of sesame has developed rapidly. Thus far, the genomes of five sesame accessions have been released, including white and black seed sesame. The genome studies reveal the function and structure of the sesame genome, and facilitate the exploitation of molecular markers, the construction of genetic maps and the study of pan-genomes. Methylomics focus on the study of the molecular level changes under different environmental conditions. Transcriptomics provide a powerful tool to study abiotic/biotic stress, organ development, and noncoding RNAs, and proteomics and metabonomics also provide some support in studying abiotic stress and important traits. In addition, the opportunities and challenges of multi-omics in sesame genetics breeding were also described. This review summarizes the current research status of sesame from the perspectives of multi-omics and hopes to provide help for further in-depth research on sesame.https://www.mdpi.com/1422-0067/24/4/3105sesamegenomicsmethylomicstranscriptomicsproteomicsmetabonomics |
| spellingShingle | Huan Li Muhammad Tahir ul Qamar Li Yang Junchao Liang Jun You Linhai Wang Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement International Journal of Molecular Sciences sesame genomics methylomics transcriptomics proteomics metabonomics |
| title | Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement |
| title_full | Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement |
| title_fullStr | Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement |
| title_full_unstemmed | Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement |
| title_short | Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement |
| title_sort | current progress applications and challenges of multi omics approaches in sesame genetic improvement |
| topic | sesame genomics methylomics transcriptomics proteomics metabonomics |
| url | https://www.mdpi.com/1422-0067/24/4/3105 |
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