Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis

Abstract The incorporation of machine learning methods into proteomics workflows improves the identification of disease-relevant biomarkers and biological pathways. However, machine learning models, such as deep neural networks, typically suffer from lack of interpretability. Here, we present a deep...

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Bibliographic Details
Main Authors: Erik Hartman, Aaron M. Scott, Christofer Karlsson, Tirthankar Mohanty, Suvi T. Vaara, Adam Linder, Lars Malmström, Johan Malmström
Format: Article
Language:English
Published: Nature Portfolio 2023-09-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-023-41146-4