Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China
Psammosilene tunicoides is an endangered medical herb endemic to south-western China. In this study, the complete plastid genome of the species was characterized and assembled using the next-generation DNA sequencing method. The plastid genome is 153,978 bp in length, including a large single copy (...
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1659120 |
| _version_ | 1827773334012559360 |
|---|---|
| author | Yuling Li Jiuxiang Huang Gang Yao |
| author_facet | Yuling Li Jiuxiang Huang Gang Yao |
| author_sort | Yuling Li |
| collection | DOAJ |
| description | Psammosilene tunicoides is an endangered medical herb endemic to south-western China. In this study, the complete plastid genome of the species was characterized and assembled using the next-generation DNA sequencing method. The plastid genome is 153,978 bp in length, including a large single copy (LSC) region of 83,981 bp and a small single copy (SSC) region of 17,489 bp, which were separated by a pair of inverted repeat (IR) regions of 26,254 bp. The genome encoded 112 unique genes, including 78 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content of the whole genome is 36.49%. The phylogenetic analysis based on 17 plastid genome of Caryophyllaceae revealed that P. tunicoides nested within the tribe Caryophylleae with strong support value. |
| first_indexed | 2024-03-11T13:21:34Z |
| format | Article |
| id | doaj.art-6c02b7b5938740e492d2526b27af08d5 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:34Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-6c02b7b5938740e492d2526b27af08d52023-11-03T10:28:36ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422798279910.1080/23802359.2019.16591201659120Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western ChinaYuling Li0Jiuxiang Huang1Gang Yao2South China Agricultural UniversitySouth China Agricultural UniversitySouth China Agricultural UniversityPsammosilene tunicoides is an endangered medical herb endemic to south-western China. In this study, the complete plastid genome of the species was characterized and assembled using the next-generation DNA sequencing method. The plastid genome is 153,978 bp in length, including a large single copy (LSC) region of 83,981 bp and a small single copy (SSC) region of 17,489 bp, which were separated by a pair of inverted repeat (IR) regions of 26,254 bp. The genome encoded 112 unique genes, including 78 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content of the whole genome is 36.49%. The phylogenetic analysis based on 17 plastid genome of Caryophyllaceae revealed that P. tunicoides nested within the tribe Caryophylleae with strong support value.http://dx.doi.org/10.1080/23802359.2019.1659120caryophyllaceaephylogenomicsplastid genomepsammosilene |
| spellingShingle | Yuling Li Jiuxiang Huang Gang Yao Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China Mitochondrial DNA. Part B. Resources caryophyllaceae phylogenomics plastid genome psammosilene |
| title | Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China |
| title_full | Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China |
| title_fullStr | Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China |
| title_full_unstemmed | Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China |
| title_short | Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), an endangered medical herb endemic to south-western China |
| title_sort | characterization of the complete plastid genome of psammosilene tunicoides caryophyllaceae an endangered medical herb endemic to south western china |
| topic | caryophyllaceae phylogenomics plastid genome psammosilene |
| url | http://dx.doi.org/10.1080/23802359.2019.1659120 |
| work_keys_str_mv | AT yulingli characterizationofthecompleteplastidgenomeofpsammosilenetunicoidescaryophyllaceaeanendangeredmedicalherbendemictosouthwesternchina AT jiuxianghuang characterizationofthecompleteplastidgenomeofpsammosilenetunicoidescaryophyllaceaeanendangeredmedicalherbendemictosouthwesternchina AT gangyao characterizationofthecompleteplastidgenomeofpsammosilenetunicoidescaryophyllaceaeanendangeredmedicalherbendemictosouthwesternchina |